PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

WRKY

Protein Properties

Length: 344aa MW: 37746.1 Da PI: 10.2958

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10023561m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.9	1.3e-30	262	319	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +d +++++tYegeH+h+ Carubv10023561m 262 DEYSWRKYGQKPIKGSPHPRGYYKCSSFrGCPARKHVERALDDSTMLIVTYEGEHRHN 319 9**********************9877**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	9.6E-18	209	258	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	1.1E-32	248	320	IPR003657	WRKY domain
PROSITE profile	PS50811	29.631	255	321	IPR003657	WRKY domain
SuperFamily	SSF118290	3.92E-26	258	320	IPR003657	WRKY domain
SMART	SM00774	1.1E-36	260	320	IPR003657	WRKY domain
Pfam	PF03106	1.9E-26	262	318	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0042742	Biological Process	defense response to bacterium
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
LFFSHSSKYR KLHISSDLLL IMTVDIMRIP KMEDQTAIQE AASQGLQSME HLIRILSNPP 60 QERSNVDCSE ITDFTVSKFK KVISLLNRTG HARFRRGPVH SPPPPPPPPP APVPVPVQIS 120 APVSFVQSNQ QSVTLDFTRP SSFGAKTKSC SEVVEFAKES FSVSSNNSSF MSSAITGDGS 180 VSKGSSIFLA PANPLPSSAK PPLSGLPYRK RCFEHDHSEN FSGKISGSGN GKCHCKKSRK 240 NRMKRTVRVP AISAKIADIP PDEYSWRKYG QKPIKGSPHP RGYYKCSSFR GCPARKHVER 300 ALDDSTMLIV TYEGEHRHNQ SAMQENMMMA TTPSVSGLVF GSV*

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

LFFSHSSKYR KLHISSDLLL IMTVDIMRIP KMEDQTAIQE AASQGLQSME HLIRILSNPP  60
QERSNVDCSE ITDFTVSKFK KVISLLNRTG HARFRRGPVH SPPPPPPPPP APVPVPVQIS  120
APVSFVQSNQ QSVTLDFTRP SSFGAKTKSC SEVVEFAKES FSVSSNNSSF MSSAITGDGS  180
VSKGSSIFLA PANPLPSSAK PPLSGLPYRK RCFEHDHSEN FSGKISGSGN GKCHCKKSRK  240
NRMKRTVRVP AISAKIADIP PDEYSWRKYG QKPIKGSPHP RGYYKCSSFR GCPARKHVER  300
ALDDSTMLIV TYEGEHRHNQ SAMQENMMMA TTPSVSGLVF GSV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	4e-21	248	319	2	72	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00278	DAP	Transfer from AT2G24570	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10023561m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF425836	0.0	AF425836.1 Arabidopsis thaliana WRKY transcription factor 17 (WRKY17) mRNA, complete cds.
GenBank	AK227604	0.0	AK227604.1 Arabidopsis thaliana mRNA for WRKY transcription factor 17, complete cds, clone: RAFL14-20-C13.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006293496.2	0.0	probable WRKY transcription factor 17
Swissprot	Q9SJA8	0.0	WRK17_ARATH; Probable WRKY transcription factor 17
TrEMBL	R0HAG8	0.0	R0HAG8_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_006293496.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2508	27	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24570.1	1e-178	WRKY DNA-binding protein 17

Link Out ? help Back to Top
Phytozome	Carubv10023561m
Entrez Gene	17889298

Publications ? help Back to Top
Ali MA,Wieczorek K,Kreil DP,Bohlmann H The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots. PLoS ONE, 2014. 9(7): p. e102360 [PMID:25033038] Ali MA, et al. Transcription factors WRKY11 and WRKY17 are involved in abiotic stress responses in Arabidopsis. J. Plant Physiol., 2018. 226: p. 12-21 [PMID:29689430]