PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10023532m
Common NameCARUB_v10023532mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 352aa    MW: 36916.2 Da    PI: 6.5856
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10023532mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.4e-11153198555
                      HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      h+++Er RR+ri +++  L+el+P+ +      K +Ka++L + ++Y+k Lq
  Carubv10023532m 153 HSIAERLRRERIAERMKALQELVPNgN------KTDKASMLDEIIDYVKFLQ 198
                      99***********************55......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.59E-13146202No hitNo description
SuperFamilySSF474594.32E-17146207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.409148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-16150207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-9153198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-14154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MMNSSSLLTP FSSSSSHIQT PTTTTFDHED FLDQIFSSTP WPSVVDDAHP PPPTDGFHSH  60
DVDSRNQQIM MMPLNDGSSV HALYNGFSSS GSLPNFHIPQ GSGGGMMNQE RQTQTQTQPQ  120
ASASTATGGT VAAAPPQSRT KVRARRGQAT DPHSIAERLR RERIAERMKA LQELVPNGNK  180
TDKASMLDEI IDYVKFLQLQ VKVLSMSRLG GAASVSSQIS EAGGSHGNAS SAMAGGNQTA  240
GNSSNDSSIT MTEHQVAKLM EEDMGSAMQY LQGKGLCLMP ISLATAISTA TCHTRNPLIP  300
GAADVGVNVP SSPNLSGMTI QSTNTTMGKG NGVTEGSLSI AVKEAVSVSK P*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157162RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10023532m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1763700.0AK176370.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH066), complete cds, clone: RAFL24-07-J21.
GenBankBT0265120.0BT026512.1 Arabidopsis thaliana At2g24260 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294501.10.0transcription factor bHLH66 isoform X1
SwissprotQ9ZUG90.0BH066_ARATH; Transcription factor bHLH66
TrEMBLR0HCZ60.0R0HCZ6_9BRAS; Uncharacterized protein
STRINGXP_006294501.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30422763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.10.0LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]