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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Carubv10023521m |
| Common Name | CARUB_v10023521mg |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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| Family |
Trihelix |
| Protein Properties |
Length: 354aa MW: 40133.2 Da PI: 9.4435 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Carubv10023521m | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 52.7 | 1.1e-16 | 46 | 128 | 2 | 75 |
trihelix 2 WtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75
Wt +e+l+Liea++ eer r++ + + +W+++ ++ ++rg++r+++qC++kw+nl ++ykki+e e++r + s
Carubv10023521m 46 WTVNETLVLIEAKKMEEERRMRRSekkpenknkSSELRWKWIEEYSWRRGCQRNQNQCNDKWDNLMRDYKKIREYERSRIESS 128
*************966666554322445555558999****************************************985444 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 354 aa
Download sequence Send
to blast |
FLNSQDSKTH TDGYAYLLVN PKRDTHMADP SGGAEKVTRE FRKGNWTVNE TLVLIEAKKM 60
EEERRMRRSE KKPENKNKSS ELRWKWIEEY SWRRGCQRNQ NQCNDKWDNL MRDYKKIREY 120
ERSRIESSSF NTGSSPPASY WKMEKSERKE RSLPTNMLSQ IYEALAELVE KKTLPYSSSS 180
SLGNGGQGFV APVMAQQMLQ IPTTIVLSLQ PPPPQPLVLS HPPPFTFHAE PIQPTVDTSG 240
AKRRRTTTPP GETTAQGEIS EDADVMVGAA ISRSASVIAQ VIRESEERQE MRHKEVMRLQ 300
ERRLKMEESK ADINRQGMSG LVDAINQLAT SILALASSSS SCHNNHNRQE GPP*
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