PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10023506m
Common NameCARUB_v10023506mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 358aa    MW: 40934.1 Da    PI: 8.1005
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10023506mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26.2e-13178228154
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +r++h ++Er+RR+++N  ++ Lr+++P++   + ++ + a+i+  A++++k L
  Carubv10023506m 178 QRMTHIAVERNRRRQMNVHLNSLRSIIPSS---YIQRGDQASIVGGAIDFVKIL 228
                      79****************************...9***************99866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.37E-10176233No hitNo description
SuperFamilySSF474592.22E-15177243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.557177228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-10178228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-13178241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-9183234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MERSVQGQNK LCSLDQKVNV RRSLQVQGSV ENHQSFAFEE EQSSTASLLQ DTTIPFLQML  60
QQSEEPSSFL SIKEPNFLAL LSLQTLGKPN WELENYLPHE VPEFHSPINS ETNHYYQNTY  120
LEGVSEAISG QELPFNPLQN ANSRRKRKNN NLVTLMNKEK RKRRRTKPAK NIEEMESQRM  180
THIAVERNRR RQMNVHLNSL RSIIPSSYIQ RGDQASIVGG AIDFVKILEQ RLQSLEAQKT  240
TQQSSDSKEQ IPEDNNLRDI SSNKLRGSKE EEESSRLKID ATVIESHVNL KIQCTRKQGQ  300
LLRSIIMLEK FGFTVLHLNI TSPTNTSVSY SFNLKMEDDC KLGSADEITA AIRQIFE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145164KRKNNNLVTLMNKEKRKRRR
2159164KRKRRR
3160164RKRRR
4160165RKRRRT
5160167RKRRRTKP
6178189RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10023506m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6784340.0AB678434.1 Arabidopsis thaliana mRNA for basic helix-loop-helix DNA-binding superfamily protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006293490.10.0transcription factor bHLH70 isoform X2
SwissprotO810370.0BH070_ARATH; Transcription factor bHLH70
TrEMBLR0HQY40.0R0HQY4_9BRAS; Uncharacterized protein
STRINGXP_006293490.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31192666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]