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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Carubv10023502m |
| Common Name | CARUB_v10023502mg |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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| Family |
TCP |
| Protein Properties |
Length: 361aa MW: 40170.9 Da PI: 7.1217 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Carubv10023502m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 92.3 | 1e-28 | 26 | 107 | 1 | 70 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssa 70
a+g+kdrhsk+ T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai++l +
Carubv10023502m 26 ATGRKDRHSKVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKTAIDKLEIAettttttrqepvntkP---G 107
589*********************************************************997774454444433332210...1 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009965 | Biological Process | leaf morphogenesis |
| GO:0030154 | Biological Process | cell differentiation |
| GO:0045962 | Biological Process | positive regulation of development, heterochronic |
| Sequence ? help Back to Top |
| Protein Sequence Length: 361 aa
Download sequence Send
to blast |
MGLKGYSVGE GGGEIVEVQG GHIIRATGRK DRHSKVFTSK GPRDRRVRLS AHTAIQFYDV 60
QDRLGYDRPS KAVDWLIKKA KTAIDKLEIA ETTTTTTRQE PVNTKPGSPN LVFQRDNNDQ 120
TQFVSANLDS EDAMKTFFPA TTTTSGGGGG TNMNFQNYPH HDDDNIVSRT TTTTPQNLSQ 180
DLGLSLHPFQ GNNNAVVVPE TNSFTTTHFD TFGRISGWNH HDLTMTSSSS SEQHEEERSN 240
GGFMVNHHHH HQHQPSMMTL LNSQQQQVFL GGQQQQQQQR GTLQSSLFPH SFRSWDHQTT 300
SDQHHHHHQN QASPVMFASQ FGSHGMMMMQ GLSFPNTTRL LHGEEATQPN SSSPPQNSHL 360
*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC005311 | 0.0 | AC005311.3 Arabidopsis thaliana chromosome 2 clone T16B12 map m283, complete sequence. |
| GenBank | AY059945 | 0.0 | AY059945.1 Arabidopsis thaliana Unknown protein (At2g31070; T16B12.12) mRNA, complete cds. |
| GenBank | BT001194 | 0.0 | BT001194.1 Arabidopsis thaliana Unknown protein (At2g31070) mRNA, complete cds. |
| GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
