PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10023424m
Common NameCARUB_v10023424mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 382aa    MW: 42902.6 Da    PI: 10.4337
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10023424mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY985.9e-31315373360
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                      D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp ++++tYe eHnh+k
  Carubv10023424m 315 DDYSWRKYGQKPIKGSPYPRGYYKCSSMrGCPARKHVERCLEDPAMLIVTYEAEHNHPK 373
                      99***********************9988****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105336.7E-18265311IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.0E-33301373IPR003657WRKY domain
PROSITE profilePS5081130.366308374IPR003657WRKY domain
SuperFamilySSF1182901.44E-26311373IPR003657WRKY domain
SMARTSM007742.0E-37313373IPR003657WRKY domain
PfamPF031062.0E-26315372IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MEEIEGTNRA AVESCHRVLN LLNRPQQQQQ QDHVGFERNL VSETREAVLR FKRVSTLLST  60
SVGHARFRRA KKLPTHVSQG ILLDPCHQKT DQRTELAPSS SSQKPPVLRS GFQELSLSRP  120
SDSLTLGTKS FSLNPNAKVP LLQLSQPVVP SSNYPNLFPD KQKQQQQHQQ LQQQQQQQFH  180
ERLKAHHLHQ QQQLQKHQAE LMLRKCNGGI SLSFDNSSCT PTISSTRSFV SSLSIDGSVA  240
NVEGKNSFHL VGVPSSTDQN SLHSKRKCPL KGDEHGGLKC GSTSRCHCSK KRKHRVRRSI  300
RVPAISNKVA DIPPDDYSWR KYGQKPIKGS PYPRGYYKCS SMRGCPARKH VERCLEDPAM  360
LIVTYEAEHN HPKLPSQAIT T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-20301376276WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10023424m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2727470.0AF272747.1 Arabidopsis thaliana WRKY DNA-binding protein 21 (WRKY21) mRNA, complete cds.
GenBankAY1364410.0AY136441.1 Arabidopsis thaliana expressed protein (At2g30590) mRNA, complete cds.
GenBankBT0002310.0BT000231.1 Arabidopsis thaliana expressed protein (At2g30590) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294407.10.0probable WRKY transcription factor 21
SwissprotO043360.0WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLR0HPU00.0R0HPU0_9BRAS; Uncharacterized protein
STRINGXP_006294407.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35672861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.10.0WRKY DNA-binding protein 21