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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10023064m | ||||||||
Common Name | CARUB_v10023063mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | bZIP | ||||||||
Protein Properties | Length: 501aa MW: 54453.7 Da PI: 9.9007 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 37.2 | 6.2e-12 | 350 | 408 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr +r NR++A rs +RK +++eLe kv++L++e ++L +l +l+ + l+s++ Carubv10023064m 350 KRVKRIFANRVSAARSKERKTRYMAELEHKVQTLQTEATTLSAQLTHLQRDSMGLTSQN 408 899999******************************************99998888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.5E-17 | 346 | 410 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.611 | 348 | 411 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 7.3E-12 | 350 | 407 | No hit | No description |
Pfam | PF00170 | 3.9E-10 | 350 | 408 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.9E-11 | 350 | 405 | No hit | No description |
CDD | cd14703 | 4.78E-20 | 351 | 400 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010628 | Biological Process | positive regulation of gene expression | ||||
GO:0010629 | Biological Process | negative regulation of gene expression | ||||
GO:0090567 | Biological Process | reproductive shoot system development | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 501 aa Download sequence Send to blast |
MGGGGDTDTN MMQRVNSSSG TSSSLIPKQI SSNLHLNPAL IRSQNHHFRQ PFTGPPPPIP 60 PVSPYSQIPA TLQLKHSRSM SQPSSYFSFD SLPPLNPSPQ PVPVSVEEKN GVGFSPSLPP 120 SPFTMCHSSS SRNAGDGENL PPKKSHRRSN SDVTFGFGSV MAQNQKTPPL VPSRSLERSI 180 SGGKVSDWSN LVKEEPREGF AKARKSEGEA AMDDVFTAYM NLDNIDVLNS FGGEDGKNAN 240 GNVEEMESSR GSGTKKTNGG ISSDSEGESS ASGNVKVAVS SSSGVKRRAG GDNSPNTRHF 300 RSVSMDSSFM GKLNFGDESL LKLNGEFTEA EMKKIAADEK LAEIVMSDPK RVKRIFANRV 360 SAARSKERKT RYMAELEHKV QTLQTEATTL SAQLTHLQRD SMGLTSQNSE LKFRLQAMEQ 420 QAQLRDALSE KLTEEVHRLK LVIGEPSRRQ SGISSSGTNI SKTSLNPEMF QQLSISQLQH 480 QQMQHSNQNS TMKAKHTSNE * |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00037 | PBM | Transfer from AT2G21230 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10023064m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006294070.1 | 0.0 | transcription factor RF2a | ||||
Refseq | XP_023639860.1 | 0.0 | transcription factor RF2a | ||||
TrEMBL | R0HSG3 | 0.0 | R0HSG3_9BRAS; Uncharacterized protein | ||||
STRING | XP_006294069.1 | 0.0 | (Capsella rubella) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G21230.1 | 0.0 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10023064m |
Entrez Gene | 17890511 |