PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10022810m
Common NameCARUB_v10022810mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 643aa    MW: 70713.5 Da    PI: 7.0633
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10022810mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.38.5e-06149169526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C+ffa+ G C  G +C+F H+
  Carubv10022810m 149 PCKFFAK-GGCFNGVSCRFLHV 169
                      7******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0032144170IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-5144168IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-4149170IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.479149171IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
GFRYQTYSRR SGLNQQRASS SADHAAVFIN LLLFRVGSLA RDFEMSDSDM DIDDDEVEQK  60
VQVHTIGGEP QLLHKPIQAP NPQNGNSFVH SNFEQAKIPS DEQAKFIKEQ AFAQNNGTLS  120
RFPVPGMTPK SFFPAGERNE PEQKRVALPC KFFAKGGCFN GVSCRFLHVK ENSNFTSQQQ  180
AGNNMAGSSY IQSDLERRIS DSKEGVRVSQ LSGNGLTPFH TREHISFVNP PGPQRVVSSM  240
SFVNPPGSQR VFPFNNEMRF MPSSENIGRE SLKQMGGADF KDNRSLVINS SNPFTLRSSF  300
VHDNRSSISS YLKTDMVSSG PAWTGSLPSS VTSVLMNEGV SNVGHFEKGS NICGSGSLPT  360
LQEIAVSSEK GSEGNTTSSR KKVSSDDWEP SEPFKASFTI PPYILPSFDA LYDPFTDIEN  420
LEDRSLNASF SSKGDHAQKN SLQQRDGDSG TGPQERECKN DDKSSSCSQN QRQESVARRS  480
LEAHGVVEGV ATSVVDQNDT TTPSKEISSA AAAENRVALK RSKPAGHDSW HRSDGSSYKK  540
TLKADEIDGE VRSDAEIKVM RQFRTAVVET VKEMLKPLWR EGRLTKEVHN MIVKKAAEKV  600
VSGAVECHQV PTDTESVEQY LGFNATKMVK LVEGYVQKYG KP*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the FRIGIDA-mediated vernalization pathway, but not in the autonomous flowering pathway. Acts cooperatively with FRI (FRIGIDA) or FRL1 (FRIGIDA-LIKE 1) to promote FLC (FLOWERING LOCUS C) expression. Required for the stabilization of the FRI-C complex. {ECO:0000269|PubMed:16291783, ECO:0000269|PubMed:21282526}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10022810m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006293825.20.0protein FRIGIDA-ESSENTIAL 1
SwissprotQ84VG70.0FES1_ARATH; Protein FRIGIDA-ESSENTIAL 1
TrEMBLR0HRT60.0R0HRT6_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006293825.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134681521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.10.0C3H family protein
Publications ? help Back to Top
  1. Ding L,Kim SY,Michaels SD
    FLOWERING LOCUS C EXPRESSOR family proteins regulate FLOWERING LOCUS C expression in both winter-annual and rapid-cycling Arabidopsis.
    Plant Physiol., 2013. 163(1): p. 243-52
    [PMID:23899645]