PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

TALE

Protein Properties

Length: 672aa MW: 74085 Da PI: 6.873

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10022786m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.7	1.1e-09	473	510	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe n+yps +++ LA+++gL+ +qV++WF N R + Carubv10022786m 473 FEHflNPYPSDADKHLLARQTGLSRNQVSNWFINARVR 510 665569******************************88 PP
2	BELL	124.2	5.3e-40	331	402	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r e+q++k+kLls+leeVd+rY++y+eq+q+v++sF++v+g+g+a pYt+lA+ka+SrhFrcLkda+a q+ Carubv10022786m 331 DRIEHQRRKVKLLSMLEEVDRRYNHYCEQMQMVVNSFDQVMGYGAAVPYTTLAQKAMSRHFRCLKDAVAAQL 402 589******************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	4.6E-85	257	400	IPR006563	POX domain
Pfam	PF07526	1.4E-51	263	399	IPR006563	POX domain
PROSITE profile	PS50071	12.86	451	514	IPR001356	Homeobox domain
SMART	SM00389	1.1E-9	454	518	IPR001356	Homeobox domain
CDD	cd00086	1.02E-12	454	515	No hit	No description
SuperFamily	SSF46689	1.37E-17	455	521	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.8E-28	457	520	IPR009057	Homeodomain-like
Pfam	PF05920	3.1E-18	471	510	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 672 aa Download sequence Send to blast
MGLVTTTTTT TLLHHQDLDS SSSMSQDYHH HHHHQGIFSF SNGFHRSSST THQEEVDESA 60 VSGAAQILVY ESSAGMLSEM FAYPGGGGGG GSSGEILDQS STKQLLEQQN RHNNNNSSTL 120 HMLLPNHHQQ QGFAFTDENT IQEQQQQHFT WPSSSDHHHQ QQNRDMIGTV HVEGGKGLSL 180 SLSSSLAAAK AEEYRSIYCA AVDGTSSSSN ASAHHHQYNQ FKNLLLDNSS SSHHHHHQVV 240 GHFGSSSSSP MAASSSIGGI YTLRNSKYTK PAQELLEEFC SVGRGHIKKN KLSRNNSNPN 300 TTGGGGGGGG GGGSSSSAGT ANDSPPISPA DRIEHQRRKV KLLSMLEEVD RRYNHYCEQM 360 QMVVNSFDQV MGYGAAVPYT TLAQKAMSRH FRCLKDAVAA QLKRSCELLG DKEGAGAASS 420 GLTKGETPRL RLLEQSLRQQ RAFHHMGMME QEAWRPQRGL PERSVNILRA WLFEHFLNPY 480 PSDADKHLLA RQTGLSRNQV SNWFINARVR LWKPMVEEMY QQEAKEREEE EANENENKNE 540 QQRRQQQTNN NNNNNDTKPN NENNFTTHVI TTQTPTTMTS THHDNDPSFL PSIVAAASHG 600 CSDAFTVTTC HQQDVVVSDF HVIDGAANVI RFGTKQPGDV SLTLGLRHSG NIPDNNNNTS 660 SFSVRDFGDF H*

Sequence ? help Back to Top

Protein Sequence Length: 672 aa Download sequence Send to blast

MGLVTTTTTT TLLHHQDLDS SSSMSQDYHH HHHHQGIFSF SNGFHRSSST THQEEVDESA  60
VSGAAQILVY ESSAGMLSEM FAYPGGGGGG GSSGEILDQS STKQLLEQQN RHNNNNSSTL  120
HMLLPNHHQQ QGFAFTDENT IQEQQQQHFT WPSSSDHHHQ QQNRDMIGTV HVEGGKGLSL  180
SLSSSLAAAK AEEYRSIYCA AVDGTSSSSN ASAHHHQYNQ FKNLLLDNSS SSHHHHHQVV  240
GHFGSSSSSP MAASSSIGGI YTLRNSKYTK PAQELLEEFC SVGRGHIKKN KLSRNNSNPN  300
TTGGGGGGGG GGGSSSSAGT ANDSPPISPA DRIEHQRRKV KLLSMLEEVD RRYNHYCEQM  360
QMVVNSFDQV MGYGAAVPYT TLAQKAMSRH FRCLKDAVAA QLKRSCELLG DKEGAGAASS  420
GLTKGETPRL RLLEQSLRQQ RAFHHMGMME QEAWRPQRGL PERSVNILRA WLFEHFLNPY  480
PSDADKHLLA RQTGLSRNQV SNWFINARVR LWKPMVEEMY QQEAKEREEE EANENENKNE  540
QQRRQQQTNN NNNNNDTKPN NENNFTTHVI TTQTPTTMTS THHDNDPSFL PSIVAAASHG  600
CSDAFTVTTC HQQDVVVSDF HVIDGAANVI RFGTKQPGDV SLTLGLRHSG NIPDNNNNTS  660
SFSVRDFGDF H*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	8e-16	460	517	1	58	Homeobox protein Meis1
4xrs_B	8e-16	460	517	1	58	Homeobox protein Meis1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	301	313	TGGGGGGGGGGGS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269\|PubMed:17873098}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10022786m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY058179	0.0	AY058179.1 Arabidopsis thaliana At2g23760/F27L4.6 mRNA, complete cds.
GenBank	AY142019	0.0	AY142019.1 Arabidopsis thaliana At2g23760/F27L4.6 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006293805.1	0.0	BEL1-like homeodomain protein 4
Swissprot	Q94KL5	0.0	BLH4_ARATH; BEL1-like homeodomain protein 4
TrEMBL	R0FUV8	0.0	R0FUV8_9BRAS; Uncharacterized protein
STRING	XP_006293804.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2166	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23760.3	0.0	BEL1-like homeodomain 4

Link Out ? help Back to Top
Phytozome	Carubv10022786m
Entrez Gene	17890011

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]