PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10022772m
Common NameCARUB_v10022772mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family TALE
Protein Properties Length: 680aa    MW: 74077.9 Da    PI: 6.8029
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10022772mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.21.5e-094054421954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Carubv10022772m 405 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 442
                      554459******************************88 PP
2BELL122.71.5e-39264335172
             BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      erqe+q+kkakL ++l+eV++rY+qy++q+q+vissFe++ag+gsak+YtslAlk+iSr+FrcLk+aia+qi
  Carubv10022772m 264 ERQEIQMKKAKLSNMLHEVEQRYRQYHQQMQMVISSFEQAAGIGSAKSYTSLALKTISRQFRCLKEAIAGQI 335
                      79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.6E-82184333IPR006563POX domain
PfamPF075267.7E-47190332IPR006563POX domain
PROSITE profilePS5007112.26383446IPR001356Homeobox domain
SMARTSM003892.3E-9386450IPR001356Homeobox domain
CDDcd000862.16E-12386446No hitNo description
SuperFamilySSF466895.56E-17387453IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-29389453IPR009057Homeodomain-like
PfamPF059202.8E-18403442IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MAAYFHGNPP EISAGSDGGL QTLILMNPTT YVQYTQADDD SNNNNNNSNN NNNNNNNTNT  60
NNSSFVFLDS HAPPPNASQQ FVGIPLSGHE AASITAADNI SVLHGYPPRV QYSLYGSHQV  120
DPTHQQAACE TPRAQQGLSL TLSSQQQQQQ QHHHQQHQPI HVGFGSGPGE DIRVGSGSTG  180
SGVTNGIANL VSSKYLKAAQ ELLDEVVNAD SDDINAKSQL FSSKKGSSGN DKAVGESSAG  240
AGGEGSGGGG EAAGKRTVEL GTAERQEIQM KKAKLSNMLH EVEQRYRQYH QQMQMVISSF  300
EQAAGIGSAK SYTSLALKTI SRQFRCLKEA IAGQIKAANK SLGEEDSVSG VGRFEGSRLK  360
FVDHHLRQQR ALQQLGMIQH PSNNAWRPQR GLPERAVSVL RAWLFEHFLH PYPKDSDKHM  420
LAKQTGLTRS QVSNWFINAR VRLWKPMVEE MYMEEMKEQG KNMGSMEKTP LDQSNEDSAS  480
KSTSNQEKSP MADTYHMNPN HNGDLEGVTG IQGSPKRLRT SEETMMQPIN ADFSSNEKLT  540
MKILEERQGI RSDGGYPFMG NFGQYQMDEM SRFDVVSDQE LMAQRYSGNN NGVSLTLGLP  600
HCDNLSSTHH QGFMQTHHGI PIGRRVKIGE TEEYGAAAIN GGGSAATAHS SAAAAAAYNG  660
MNIQNQKRYV AQLLPDFVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-16392450563Homeobox protein Meis2
3k2a_B2e-16392450563Homeobox protein Meis2
4xrs_A1e-16392449158Homeobox protein Meis1
4xrs_B1e-16392449158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10022772m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2272720.0AK227272.1 Arabidopsis thaliana mRNA for putative homeodomain transcription factor, complete cds, clone: RAFL11-09-C20.
GenBankAY0721750.0AY072175.1 Arabidopsis thaliana putative homeodomain transcription factor (At2g35940) mRNA, complete cds.
GenBankAY0965480.0AY096548.1 Arabidopsis thaliana putative homeodomain transcription factor (At2g35940) mRNA, complete cds.
GenBankAY0998540.0AY099854.1 Arabidopsis thaliana putative homeodomain transcription factor (At2g35940) mRNA, complete cds.
GenBankBT0084220.0BT008422.1 Arabidopsis thaliana At2g35940 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023639678.10.0BEL1-like homeodomain protein 1
SwissprotQ9SJ560.0BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLR0HRR20.0R0HRR2_9BRAS; Uncharacterized protein
STRINGXP_006293790.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50082650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.30.0BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]