PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10022772m | ||||||||
Common Name | CARUB_v10022772mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | TALE | ||||||||
Protein Properties | Length: 680aa MW: 74077.9 Da PI: 6.8029 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.2 | 1.5e-09 | 405 | 442 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Carubv10022772m 405 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 442 554459******************************88 PP | |||||||
2 | BELL | 122.7 | 1.5e-39 | 264 | 335 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkakL ++l+eV++rY+qy++q+q+vissFe++ag+gsak+YtslAlk+iSr+FrcLk+aia+qi Carubv10022772m 264 ERQEIQMKKAKLSNMLHEVEQRYRQYHQQMQMVISSFEQAAGIGSAKSYTSLALKTISRQFRCLKEAIAGQI 335 79*********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 3.6E-82 | 184 | 333 | IPR006563 | POX domain |
Pfam | PF07526 | 7.7E-47 | 190 | 332 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.26 | 383 | 446 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.3E-9 | 386 | 450 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.16E-12 | 386 | 446 | No hit | No description |
SuperFamily | SSF46689 | 5.56E-17 | 387 | 453 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.1E-29 | 389 | 453 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.8E-18 | 403 | 442 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009610 | Biological Process | response to symbiotic fungus | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010197 | Biological Process | polar nucleus fusion | ||||
GO:0010201 | Biological Process | response to continuous far red light stimulus by the high-irradiance response system | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 680 aa Download sequence Send to blast |
MAAYFHGNPP EISAGSDGGL QTLILMNPTT YVQYTQADDD SNNNNNNSNN NNNNNNNTNT 60 NNSSFVFLDS HAPPPNASQQ FVGIPLSGHE AASITAADNI SVLHGYPPRV QYSLYGSHQV 120 DPTHQQAACE TPRAQQGLSL TLSSQQQQQQ QHHHQQHQPI HVGFGSGPGE DIRVGSGSTG 180 SGVTNGIANL VSSKYLKAAQ ELLDEVVNAD SDDINAKSQL FSSKKGSSGN DKAVGESSAG 240 AGGEGSGGGG EAAGKRTVEL GTAERQEIQM KKAKLSNMLH EVEQRYRQYH QQMQMVISSF 300 EQAAGIGSAK SYTSLALKTI SRQFRCLKEA IAGQIKAANK SLGEEDSVSG VGRFEGSRLK 360 FVDHHLRQQR ALQQLGMIQH PSNNAWRPQR GLPERAVSVL RAWLFEHFLH PYPKDSDKHM 420 LAKQTGLTRS QVSNWFINAR VRLWKPMVEE MYMEEMKEQG KNMGSMEKTP LDQSNEDSAS 480 KSTSNQEKSP MADTYHMNPN HNGDLEGVTG IQGSPKRLRT SEETMMQPIN ADFSSNEKLT 540 MKILEERQGI RSDGGYPFMG NFGQYQMDEM SRFDVVSDQE LMAQRYSGNN NGVSLTLGLP 600 HCDNLSSTHH QGFMQTHHGI PIGRRVKIGE TEEYGAAAIN GGGSAATAHS SAAAAAAYNG 660 MNIQNQKRYV AQLLPDFVA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 2e-16 | 392 | 450 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 2e-16 | 392 | 450 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 1e-16 | 392 | 449 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 1e-16 | 392 | 449 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10022772m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK227272 | 0.0 | AK227272.1 Arabidopsis thaliana mRNA for putative homeodomain transcription factor, complete cds, clone: RAFL11-09-C20. | |||
GenBank | AY072175 | 0.0 | AY072175.1 Arabidopsis thaliana putative homeodomain transcription factor (At2g35940) mRNA, complete cds. | |||
GenBank | AY096548 | 0.0 | AY096548.1 Arabidopsis thaliana putative homeodomain transcription factor (At2g35940) mRNA, complete cds. | |||
GenBank | AY099854 | 0.0 | AY099854.1 Arabidopsis thaliana putative homeodomain transcription factor (At2g35940) mRNA, complete cds. | |||
GenBank | BT008422 | 0.0 | BT008422.1 Arabidopsis thaliana At2g35940 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023639678.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Swissprot | Q9SJ56 | 0.0 | BLH1_ARATH; BEL1-like homeodomain protein 1 | ||||
TrEMBL | R0HRR2 | 0.0 | R0HRR2_9BRAS; Uncharacterized protein | ||||
STRING | XP_006293790.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5008 | 26 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 0.0 | BEL1-like homeodomain 1 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10022772m |
Entrez Gene | 17888038 |
Publications ? help Back to Top | |||
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