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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10022771m | ||||||||
Common Name | CARUB_v10022771mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | BES1 | ||||||||
Protein Properties | Length: 689aa MW: 76812.6 Da PI: 6.5098 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 159 | 3.2e-49 | 63 | 216 | 1 | 146 |
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpl..eeaeaagssas.. 87 ggs+r+++ +E+E++k+RER+RRai+a+i+ GLR++Gny+l++raD+n+V++AL+reAGw+v +DGtt++ +g+kp+ ++a aagssas Carubv10022771m 63 GGSRRSRPLEEKERTKLRERHRRAITARILGGLRRHGNYNLRVRADINDVIAALAREAGWLVLPDGTTFPsksQGTKPPggSSAVAAGSSAShi 156 689******************************************************************9888999999988888889888877 PP DUF822 88 aspesslq.sslkssalaspvesysaspksssfpspssldsislasaasllpvlsvlslv 146 as+++s ++++ss +spve +s+++k + +p ps +d +++s++ ++ v + +lv Carubv10022771m 157 ASQQTSPPaLRVVSSGHRSPVELSSCRMKGVFTPGPSPYDIPPTQSPELVVNVNKAVGLV 216 788888777***********************************9998777776666654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 2.2E-40 | 64 | 193 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
SuperFamily | SSF51445 | 1.66E-172 | 240 | 684 | IPR017853 | Glycoside hydrolase superfamily |
Gene3D | G3DSA:3.20.20.80 | 1.5E-186 | 243 | 685 | IPR013781 | Glycoside hydrolase, catalytic domain |
Pfam | PF01373 | 5.0E-95 | 249 | 669 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.1E-64 | 280 | 294 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.1E-64 | 301 | 319 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.1E-64 | 323 | 344 | IPR001554 | Glycoside hydrolase, family 14 |
PROSITE pattern | PS00506 | 0 | 327 | 335 | IPR018238 | Glycoside hydrolase, family 14, conserved site |
PRINTS | PR00750 | 2.1E-64 | 416 | 438 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.1E-64 | 489 | 508 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.1E-64 | 523 | 539 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.1E-64 | 540 | 551 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.1E-64 | 558 | 581 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.1E-64 | 598 | 620 | IPR001554 | Glycoside hydrolase, family 14 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000272 | Biological Process | polysaccharide catabolic process | ||||
GO:0048831 | Biological Process | regulation of shoot system development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0016161 | Molecular Function | beta-amylase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 689 aa Download sequence Send to blast |
MATDMQKLLV TSEEDDDEEM DMDVKEEDDD HRNRGTRAAS GSSNDDFMFQ QSMQDQVGTP 60 GGGGSRRSRP LEEKERTKLR ERHRRAITAR ILGGLRRHGN YNLRVRADIN DVIAALAREA 120 GWLVLPDGTT FPSKSQGTKP PGGSSAVAAG SSASHIASQQ TSPPALRVVS SGHRSPVELS 180 SCRMKGVFTP GPSPYDIPPT QSPELVVNVN KAVGLVGSSI DVINSKQILE IPPNLTEQDF 240 SGTPYVPVYV MLPLGVINMK CELADRDGLL KHLRILKSIH VDGVKVDCWW GIVEGHSPQE 300 YNWNGYKQLF QMIRDLNLKI QVLMSFHECG GNVGDDVCIP LPHWVAEIGR TNPDIYFTDR 360 EGRRNPECLS WGIDKERVLR GRTALEVYFD YMRSFRIELA EFVEDGVISM VEIGLGPCGE 420 LRYPSCPIKH GWRYPGIGEF QCYDKYLLKS LRKAAESRGH LLWARGPDNT GSYNSQPQGT 480 GFFCDGGDYD GLYGRFFLKW YSQVLIDHAD QILSLAKLVF NSSCIAAKLP DVHWWYRTTS 540 HAAELTAGFY NPSNQDGYAA IASTLKKHGA TLSFVSGEVQ VLNRPDDFTG GLGEPEAVAW 600 QVLNAAWDSD TPIARENSLP CHDRVGYNKM LESVKFPNDP DRRHLSSFAY SRLIPALMEG 660 HNIVEFERFV KKLHGEAVMN HHHQHQQV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wdq_A | 1e-138 | 245 | 676 | 11 | 444 | Beta-amylase |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10022771m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK227323 | 0.0 | AK227323.1 Arabidopsis thaliana mRNA for putative beta-amylase, complete cds, clone: RAFL14-01-P19. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006293786.1 | 0.0 | beta-amylase 7 | ||||
Swissprot | O80831 | 0.0 | BAM7_ARATH; Beta-amylase 7 | ||||
TrEMBL | R0HB94 | 0.0 | R0HB94_9BRAS; Beta-amylase | ||||
STRING | XP_006293786.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2945 | 25 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45880.1 | 0.0 | beta-amylase 7 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10022771m |
Entrez Gene | 17890392 |
Publications ? help Back to Top | |||
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