PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10022730m
Common NameCARUB_v10022702mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 722aa    MW: 78719.7 Da    PI: 6.5597
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10022730mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.4e-07306326526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C++f++ G C++Gd C +aHg
  Carubv10022730m 306 PCPDFRK-GACRRGDMCEYAHG 326
                      8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484035.6E-1639182IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.2E-1742183IPR020683Ankyrin repeat-containing domain
CDDcd002041.15E-1347181No hitNo description
PfamPF127965.5E-1084156IPR020683Ankyrin repeat-containing domain
SMARTSM002480.007889119IPR002110Ankyrin repeat
PROSITE profilePS5029715.77789192IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.915124159IPR002110Ankyrin repeat
SMARTSM002480.034124156IPR002110Ankyrin repeat
SMARTSM003564.0E-6301327IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-5306326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-4306328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582306328IPR000571Zinc finger, CCCH-type
SMARTSM0035668336359IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.963336360IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 722 aa     Download sequence    Send to blast
MCCGSDRLNQ IVSSRSSSPV PFEDNNLFNN TDMNHLRVET EDTFASLLEL AANNDVEGVR  60
LSIERDPSCV DEAGLWYGRQ KGSKTMVNDQ RTPLMVAATY GSIDVIKLIV SLTDANVNRA  120
CGNDQTTALH CAASGGAVNA IQVVKLLLAA GADLSLLDAE GQRAGDVIVV PPKLEGVKLM  180
LQELLSADGS STAERNLRVV TNVPNRRSSS PSHSPTGENG GSGSGSPLDS PFKLKSTEFK  240
KEYPVDPSLP DIKNSIYATD EFRMYSFKVR PCSRAYSHDW TECPFVHPGE NARRRDPRKF  300
HYSCVPCPDF RKGACRRGDM CEYAHGVFEC WLHPAQYRTR LCKDGTGCAR RVCFFAHTPE  360
ELRPLYASTG SAVPSPRSNA DYAAALSLLP GSPSGVSVMS PLSPSAAGNG MSHSNMAWPQ  420
PNVPALHLPG SNLQSSRLRS SLNARDIPTD EFNMLADYEQ QQLLNEFSNS LSRSGRMKSM  480
PPSNLEDLFS AEGSSSPRFT DSSLASAVFS PTHKSAVFNQ FQQQQQQSML SPINTSFSSP  540
KSVDHSLFSG GGRMSPRNVV EPISPMSSRV SMLAQCVKQQ QQQQQQQQQQ QQQQQQQHQF  600
RSLSSRELRT NSSPIVGSPV NNNSWSSKWG SSNGQPDWGM SSEALGKLRS SSSFDGEEPD  660
VSWVQSLVKE SPTDAKEKAA TASSSGENVK QPNPIEPVMD HAGLEAWIEQ MQLDQLVAQQ  720
N*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10022730m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0372320.0AY037232.1 Arabidopsis thaliana At2g41900/T6D20.20 mRNA, complete cds.
GenBankAY0939570.0AY093957.1 Arabidopsis thaliana At2g41900/T6D20.20 mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBankU904390.0U90439.3 Arabidopsis thaliana chromosome 2 BAC T6D20 genomic sequence, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006293740.10.0zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLR0HRM50.0R0HRM5_9BRAS; Uncharacterized protein
STRINGXP_006293739.10.0(Capsella rubella)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]