PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10022702m
Common NameCARUB_v10022702mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 747aa    MW: 81504.9 Da    PI: 6.708
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10022702mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.4e-07331351526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C++f++ G C++Gd C +aHg
  Carubv10022702m 331 PCPDFRK-GACRRGDMCEYAHG 351
                      8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484035.91E-1664207IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.7E-1767208IPR020683Ankyrin repeat-containing domain
CDDcd002041.21E-1372206No hitNo description
PfamPF127965.8E-10109181IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0078114144IPR002110Ankyrin repeat
PROSITE profilePS5029715.777114217IPR020683Ankyrin repeat-containing domain
SMARTSM002480.034149181IPR002110Ankyrin repeat
PROSITE profilePS5008811.915149184IPR002110Ankyrin repeat
SMARTSM003564.0E-6326352IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-4331353IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-5331351IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582331353IPR000571Zinc finger, CCCH-type
SMARTSM0035668361384IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.963361385IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 747 aa     Download sequence    Send to blast
MLLFHVSVSL PRQKIKKESD STDGSMCCGS DRLNQIVSSR SSSPVPFEDN NLFNNTDMNH  60
LRVETEDTFA SLLELAANND VEGVRLSIER DPSCVDEAGL WYGRQKGSKT MVNDQRTPLM  120
VAATYGSIDV IKLIVSLTDA NVNRACGNDQ TTALHCAASG GAVNAIQVVK LLLAAGADLS  180
LLDAEGQRAG DVIVVPPKLE GVKLMLQELL SADGSSTAER NLRVVTNVPN RRSSSPSHSP  240
TGENGGSGSG SPLDSPFKLK STEFKKEYPV DPSLPDIKNS IYATDEFRMY SFKVRPCSRA  300
YSHDWTECPF VHPGENARRR DPRKFHYSCV PCPDFRKGAC RRGDMCEYAH GVFECWLHPA  360
QYRTRLCKDG TGCARRVCFF AHTPEELRPL YASTGSAVPS PRSNADYAAA LSLLPGSPSG  420
VSVMSPLSPS AAGNGMSHSN MAWPQPNVPA LHLPGSNLQS SRLRSSLNAR DIPTDEFNML  480
ADYEQQQLLN EFSNSLSRSG RMKSMPPSNL EDLFSAEGSS SPRFTDSSLA SAVFSPTHKS  540
AVFNQFQQQQ QQSMLSPINT SFSSPKSVDH SLFSGGGRMS PRNVVEPISP MSSRVSMLAQ  600
CVKQQQQQQQ QQQQQQQQQQ QQHQFRSLSS RELRTNSSPI VGSPVNNNSW SSKWGSSNGQ  660
PDWGMSSEAL GKLRSSSSFD GEEPDVSWVQ SLVKESPTDA KEKAATASSS GENVKQPNPI  720
EPVMDHAGLE AWIEQMQLDQ LVAQQN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10022702m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBankU904390.0U90439.3 Arabidopsis thaliana chromosome 2 BAC T6D20 genomic sequence, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006293740.10.0zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLR0FUQ40.0R0FUQ4_9BRAS; Uncharacterized protein
STRINGXP_006293739.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17852879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]