PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10022651m

Common Name

CARUB_v10022651mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

FAR1

Protein Properties

Length: 813aa MW: 93003.4 Da PI: 6.7748

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10022651m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.9	4.1e-24	57	142	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY+eYA++vGF +++++s++skr+g++++ + Cs+ g+++e++ + ++r+ +tgCka l++k+++d+kw+++++++eHnHe++p Carubv10022651m 57 FYREYARSVGFGITIKASRRSKRSGKFIDVKIACSRFGTKREKSAA----INPRSCPKTGCKAGLHMKRKEDEKWVIYNFVKEHNHEICP 142 9*************************************998877....99*********************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-21	57	142	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.5E-22	224	316	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.287	501	539	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.8E-6	511	536	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.5E-7	514	541	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 813 aa Download sequence Send to blast
MDVEDVEIDL LTTSGNVDEF CEASTSGNVA PSLEQYANVG HPGNGMEFES KEAVYYFYRE 60 YARSVGFGIT IKASRRSKRS GKFIDVKIAC SRFGTKREKS AAINPRSCPK TGCKAGLHMK 120 RKEDEKWVIY NFVKEHNHEI CPDDFYISIR GKNKPAVSLA NQKKGLQLAL DKGDLELLLD 180 HFMDMQDKQP GFFYAVDFNS ENHVRNVFWL DAKAKHDYRS FSDVVLFDTF YVRSRYRIPF 240 APFIGVSHHC QYVLLGCVLI GEESESTYSW LFRTWLKAVS GQAPGVMITD QDKLLSDIVV 300 EVLPTARHFF CLWNVLSKIP EMLNPFLSED DGFMESFWNC VNSSWIDEQF ERRWSNVISK 360 FELNENEWVQ LLFRDRKKWV PLYFHGICLA GLSGPERPGS IASHFDNYMN AEATFKDFFE 420 LYKQFLQYRC EVEAKIDLES QSKQPTLPTL AFEKQLSLIY TDAAFKKFQA EVLGVVSCQP 480 RKEREDGTTV IFRVEDFEER QNLSVVLNKE LLNVYCSCHL FEYHGFLCKH AILVLQNSGV 540 SCIPSQYILK RWSKRCNNIE GKKEKCVYIH NRMARFDDLC RRFVKLGEVA SLSDEAYKTA 600 LKLLEETKKH CVNNSPKFPS EPDKLMPGVC VSIGLESEGM LESTSKLSKK KKIQKKRKVY 660 CRPEDATNRS EELQQEIEQV SSRAPAFENC YIPQADMEET EQGSSATNRG VYYSSQQTIQ 720 GFSSVTSIQD GYYGHPPTIK AMGSMYSLHG RMSQYETQSS IQGAFQGQTS FRGSAIRGCY 780 DIEETLHDDM TMESSQFQGS GQSHPSNSRF SN*

Sequence ? help Back to Top

Protein Sequence Length: 813 aa Download sequence Send to blast

MDVEDVEIDL LTTSGNVDEF CEASTSGNVA PSLEQYANVG HPGNGMEFES KEAVYYFYRE  60
YARSVGFGIT IKASRRSKRS GKFIDVKIAC SRFGTKREKS AAINPRSCPK TGCKAGLHMK  120
RKEDEKWVIY NFVKEHNHEI CPDDFYISIR GKNKPAVSLA NQKKGLQLAL DKGDLELLLD  180
HFMDMQDKQP GFFYAVDFNS ENHVRNVFWL DAKAKHDYRS FSDVVLFDTF YVRSRYRIPF  240
APFIGVSHHC QYVLLGCVLI GEESESTYSW LFRTWLKAVS GQAPGVMITD QDKLLSDIVV  300
EVLPTARHFF CLWNVLSKIP EMLNPFLSED DGFMESFWNC VNSSWIDEQF ERRWSNVISK  360
FELNENEWVQ LLFRDRKKWV PLYFHGICLA GLSGPERPGS IASHFDNYMN AEATFKDFFE  420
LYKQFLQYRC EVEAKIDLES QSKQPTLPTL AFEKQLSLIY TDAAFKKFQA EVLGVVSCQP  480
RKEREDGTTV IFRVEDFEER QNLSVVLNKE LLNVYCSCHL FEYHGFLCKH AILVLQNSGV  540
SCIPSQYILK RWSKRCNNIE GKKEKCVYIH NRMARFDDLC RRFVKLGEVA SLSDEAYKTA  600
LKLLEETKKH CVNNSPKFPS EPDKLMPGVC VSIGLESEGM LESTSKLSKK KKIQKKRKVY  660
CRPEDATNRS EELQQEIEQV SSRAPAFENC YIPQADMEET EQGSSATNRG VYYSSQQTIQ  720
GFSSVTSIQD GYYGHPPTIK AMGSMYSLHG RMSQYETQSS IQGAFQGQTS FRGSAIRGCY  780
DIEETLHDDM TMESSQFQGS GQSHPSNSRF SN*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10022651m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006293361.1	0.0	protein FAR1-RELATED SEQUENCE 2 isoform X1
Swissprot	Q3EBQ3	0.0	FRS2_ARATH; Protein FAR1-RELATED SEQUENCE 2
TrEMBL	R0HA26	0.0	R0HA26_9BRAS; Uncharacterized protein
STRING	XP_006293361.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.3	0.0	FAR1-related sequence 2

Link Out ? help Back to Top
Phytozome	Carubv10022651m
Entrez Gene	17889007

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]