PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10022440m
Common NameCARUB_v10022440mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 415aa    MW: 48211 Da    PI: 5.9677
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10022440mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM89.56e-2821306128
              NAM   6 rFhPtdeelvveyLkkkvegkk..leleev.ikevdiykvePwdLp.kkvkaeekewyfFskrdkkya..tgkrknratksgyWkatgkdkevl 93 
                      ++ P+d++l+   L ++    +  ++l ++ i++++iy+++P++L  +  k++++ew+f s+r+kk++   g +++r  + gyW+at  +k+vl
  Carubv10022440m   2 KYAPNDKNLIETLLGREHYFGEnnNSLLKFfIHQANIYESNPEQLSvEYEKGNDTEWFFISERNKKKKgkGGINQKRGDNGGYWHATVATKDVL 95 
                      899***********88744333236666666**************9445455778***9999998887433679999999************** PP

              NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + +g+ +g  + L +y g++pkg+ktdW+mhey +
  Carubv10022440m  96 DGQGNIIGHDTALSYYVGKQPKGVKTDWLMHEYWV 130
                      *********************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023654.8E-111128IPR003441NAC domain
PROSITE profilePS5100535.6571149IPR003441NAC domain
SuperFamilySSF1019411.18E-321148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
YKYAPNDKNL IETLLGREHY FGENNNSLLK FFIHQANIYE SNPEQLSVEY EKGNDTEWFF  60
ISERNKKKKG KGGINQKRGD NGGYWHATVA TKDVLDGQGN IIGHDTALSY YVGKQPKGVK  120
TDWLMHEYWV DRDESDDAKD YALCKIYKST FATKKKKTEE EENEKKKKVP KKKKVEQQFP  180
QAPLGSYQPQ ARYWAYQQPH QWQGPVDSSQ PQSHDLAYQH QQFWQVPVDS SQPQYQQPHQ  240
RQPYEFTYEQ YLMMTTPEKE NGIATQQQQL SLPPPPHTQE NGVATQHQQQ QQLSVPPPRP  300
THGQDSRSHM VMTSRSNGYN IQEDLFDMSK DDRFFNIDEL FNNEEEHSVA TQQQQQQQIT  360
PSLTHDQGQD SRSDILMTDQ DWSDIFNGEF FDIDGLWNDV KKGHDVCGPP NGRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-16114824167NAC domain-containing protein 19
3swm_B1e-16114824167NAC domain-containing protein 19
3swm_C1e-16114824167NAC domain-containing protein 19
3swm_D1e-16114824167NAC domain-containing protein 19
3swp_A1e-16114824167NAC domain-containing protein 19
3swp_B1e-16114824167NAC domain-containing protein 19
3swp_C1e-16114824167NAC domain-containing protein 19
3swp_D1e-16114824167NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16268ERNKKKK
2154173KKKTEEEENEKKKKVPKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10022440m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023644274.10.0NAC domain-containing protein 30
TrEMBLR0IDU40.0R0IDU4_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006301960.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27931563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55210.15e-47NAC domain containing protein 63