PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10022409m
Common NameCARUB_v10022409mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 388aa    MW: 43127.7 Da    PI: 6.1943
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10022409mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.52.4e-27207266259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-.SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkvers.aedpkvveitYegeHnhe 59 
                      +Dg++WrKYGqK+ k ++ pr+YYrC+++ +Cpv+k+v+r+ +ed++++ +tYeg+H+h+
  Carubv10022409m 207 NDGCQWRKYGQKTAKTNPLPRAYYRCSMSsNCPVRKQVQRCgEEDTSAFMTTYEGTHDHP 266
                      8***************************99**********845799*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-28191268IPR003657WRKY domain
PROSITE profilePS5081124.662201268IPR003657WRKY domain
SuperFamilySSF1182902.48E-24202268IPR003657WRKY domain
SMARTSM007744.4E-33206267IPR003657WRKY domain
PfamPF031061.8E-25207266IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MIKEETVSCI QPLDGVMEES DKEEELDATK AKVEKVREEN EKLKLLLSTI LNNYNSLQMQ  60
VSEVIRQQQG ASTELDVDHD HDKDNDDLGV DISLRLGRSP EQTVSKREEK FDKVSDDNEE  120
GTRKKRSALA LGFQIQNCED STSKLDYLCR QVKNVNNAEN KCVSSRKDVK TARNENHHQD  180
VLEEHDQAIL KKTRVCVKAA CEDPSINDGC QWRKYGQKTA KTNPLPRAYY RCSMSSNCPV  240
RKQVQRCGEE DTSAFMTTYE GTHDHPLPME ATHMAAGTSA AASLLQSGVS SSSSSTSASL  300
SYFFPFHHIS ISTTNSHPTV TLDLTRPNYT NQSPISSSSF SLNFSSSDPP PPSSQDHTLN  360
FSGLRTQAPL STDSLMARCR TRLSGHQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-192062681474WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10022409m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301936.10.0probable WRKY transcription factor 36
SwissprotQ9CAR40.0WRK36_ARATH; Probable WRKY transcription factor 36
TrEMBLR0HY670.0R0HY67_9BRAS; Uncharacterized protein
STRINGXP_006301936.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139131825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69810.11e-178WRKY DNA-binding protein 36
Publications ? help Back to Top
  1. Yang Y, et al.
    UVR8 interacts with WRKY36 to regulate HY5 transcription and hypocotyl elongation in Arabidopsis.
    Nat Plants, 2018. 4(2): p. 98-107
    [PMID:29379156]