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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10022369m | ||||||||
Common Name | CARUB_v10022369mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | CAMTA | ||||||||
Protein Properties | Length: 1022aa MW: 113680 Da PI: 5.8512 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 168.9 | 7.9e-53 | 44 | 160 | 2 | 117 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 ++e ++rwlk+ e+ iL+n+e+ +lt ++++rp sgsl+L+n++++++frkDG++w++k+dg+++ E+he+LKvg+ e+l+cyYah+e++ptf Carubv10022369m 44 YQEaRTRWLKPPEVQFILQNYERLKLTDTAPQRPASGSLFLFNKRVLKFFRKDGHQWRRKRDGRAIAEAHERLKVGNAEALNCYYAHGEHDPTF 137 56779***************************************************************************************** PP CG-1 95 qrrcywlLeeelekivlvhylev 117 +rr+yw+L+ e+e+ivlvhy++v Carubv10022369m 138 RRRIYWMLDPEYEHIVLVHYRDV 160 *********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 73.369 | 40 | 166 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 2.8E-78 | 43 | 161 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 4.6E-46 | 46 | 160 | IPR005559 | CG-1 DNA-binding domain |
SuperFamily | SSF81296 | 5.88E-17 | 456 | 540 | IPR014756 | Immunoglobulin E-set |
CDD | cd00102 | 2.61E-7 | 456 | 541 | No hit | No description |
Pfam | PF01833 | 7.2E-8 | 456 | 539 | IPR002909 | IPT domain |
Gene3D | G3DSA:2.60.40.10 | 3.4E-8 | 456 | 543 | IPR013783 | Immunoglobulin-like fold |
Gene3D | G3DSA:1.25.40.20 | 2.0E-15 | 638 | 745 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 1.55E-16 | 639 | 747 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 15.406 | 652 | 744 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.64E-13 | 657 | 744 | No hit | No description |
Pfam | PF12796 | 3.4E-8 | 673 | 745 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0021 | 685 | 714 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 10.766 | 685 | 717 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 1300 | 724 | 753 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 81 | 802 | 824 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 3.36E-9 | 803 | 911 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
PROSITE profile | PS50096 | 7.638 | 803 | 831 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.51 | 859 | 881 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.627 | 860 | 889 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0044 | 861 | 880 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 5.4E-5 | 882 | 904 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.865 | 883 | 907 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 2.2E-4 | 885 | 904 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1022 aa Download sequence Send to blast |
MGSVAGDLYS STCDIATIFV AICRNPPLRF LFSSVHKYDI GTLYQEARTR WLKPPEVQFI 60 LQNYERLKLT DTAPQRPASG SLFLFNKRVL KFFRKDGHQW RRKRDGRAIA EAHERLKVGN 120 AEALNCYYAH GEHDPTFRRR IYWMLDPEYE HIVLVHYRDV SDREEGNQTN GQVYQFAPVP 180 TTHFSSPNSI GTQNASYNHY IGDSTDIHQH SSTSHGTAEV ISELEGSASS SELGQALKKL 240 KEQLSIGDEH VDSIDPPYIQ PESLDSLQFL GCSNDIDHLP QPTTRYQRPE NNKLERCYGG 300 NFGAQYNAKN DSNKLERCYG GYVGAQDRSS NLMLVKNDSG GTGGSVDEGS GSWKDVLEAC 360 EATIPHNSEG STPSSAKGIL AGIQEDSNWS YSNQVDQSTF LLPQDLGSFE VPASYSALGA 420 PEDNGEYCPM MDDGGEFELP FEQEMSQTGA HQLKFTIQDI SPEWGYVNET TKVIIIGSFL 480 CDPAESMWSC MFGSAKVPIE IIKEGVIRCK APPCGPGKVN LCVTSADGLS CSEIREFEYR 540 DKPDTSCLKC TLSQTSDMST STDQLLLLVK FVQTLMSDQR SEGESNSELG NDKRLKKLKA 600 DDDQWTHVIG EIRDGSSSST RRVDWLLQEL LKDKLEAWLS SRSKDRDSWS KQEQCIIHMI 660 AGLGFEWALY PILGHGVSVD FRDINGWSAL HWAARFGSEK MVAALIASGA SAGAVTDPSQ 720 QDPNGKTAAS IAASNGHKGI AGYLSEVALT NHLSSLTLGE TEISKDSAQV QAEITVNSIS 780 EPGPSDNEDQ ISLEKTLAAV RNAAQAATRI QEAFRAHSFR KRKQREAAMA ACLQEYGIYC 840 EDIEGISAMS KLTFGNVKNY HSAALSIQKK YRGYKGRKEF LELRQKVVKI QAHVRGYQIR 900 KHYKVICWAV GVLDKVVLRW RRKGAGLRGF RQDVETTDDS EDEDILKVFR KQKVDGAVNE 960 AFSRVLSMAN SPEARQQYHR VLKRYCQTKA ELGKTETLVG DDDDGLFDIA DMEFNSLFTL 1020 P* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10022369m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY510026 | 0.0 | AY510026.1 Arabidopsis thaliana ethylene-induced calmodulin-binding protein 4 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023643087.1 | 0.0 | calmodulin-binding transcription activator 4 isoform X1 | ||||
Swissprot | Q9FYG2 | 0.0 | CMTA4_ARATH; Calmodulin-binding transcription activator 4 | ||||
TrEMBL | R0GG07 | 0.0 | R0GG07_9BRAS; Uncharacterized protein | ||||
STRING | XP_006301894.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6476 | 26 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67310.1 | 0.0 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Link Out ? help Back to Top | |
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Phytozome | Carubv10022369m |
Entrez Gene | 17894309 |
Publications ? help Back to Top | |||
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