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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10022233m | ||||||||
Common Name | CARUB_v10022233mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 243aa MW: 26842.4 Da PI: 8.602 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 31.1 | 3.1e-10 | 35 | 63 | 22 | 50 |
HHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 22 KKAeELSvLCdaevaviifsstgklyeys 50 KKA ELSvLC+ v i +++++ l+ ++ Carubv10022233m 35 KKATELSVLCGNSVGFICYGPDNDLHVWP 63 79*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 9.391 | 17 | 66 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.93E-11 | 20 | 97 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.1E-8 | 22 | 62 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MAPLRVKKPN KSYGLDDDLK TKRIFFKRIF PAFKKKATEL SVLCGNSVGF ICYGPDNDLH 60 VWPEPKDNPQ ALPEIVGKFN ALSDHRRMSH ASDLFDFPNL KGLSGEELRS HLDELNSRLA 120 GIKQQKIGLL RRGNFKPKIK ETGKDDHIRV SDKGNRLGFD ELGYVFRGSH ETVSNLGSCA 180 ASKVSSDVAV SDPSLTLGFS GGDYLPVDSV PTTDNYGVCA NEGASDLRRM EFASTLFPGY 240 DRS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10022233m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC007258 | 9e-43 | AC007258.3 Arabidopsis thaliana chromosome I BAC F23H11 genomic sequence, complete sequence. | |||
GenBank | CP002684 | 9e-43 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | T2K10 | 9e-43 | AC005966.2 Arabidopsis thaliana chromosome 1 BAC T2K10 sequence, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006301772.2 | 1e-180 | agamous-like MADS-box protein AGL49 | ||||
Swissprot | Q9ZUI9 | 8e-63 | AGL49_ARATH; Agamous-like MADS-box protein AGL49 | ||||
TrEMBL | R0I988 | 1e-178 | R0I988_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_006301772.1 | 1e-179 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11232 | 9 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G60040.1 | 1e-62 | AGAMOUS-like 49 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10022233m |
Entrez Gene | 17896625 |
Publications ? help Back to Top | |||
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