PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10022138m
Common NameCARUB_v10022138mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ARR-B
Protein Properties Length: 681aa    MW: 77491 Da    PI: 5.066
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10022138mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like48.81.6e-15229278555
          G2-like   5 rWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       Wt+e H +F+ a++ L G +   Pk+ile+m+ + Lt  +++SHLQkY+ 
  Carubv10022138m 229 LWTNERHMKFLAAISIL-GDNDLRPKSILEIMNDPNLTQRQIASHLQKYKA 278
                      5****************.89999**************************85 PP
2Response_reg27.31.8e-10151211108
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      +l++d + +    l+++le+    +v ++d +++al ++++++  +++++  iemp++d + +l+ + +++  +p i++  +   +   + lk 
  Carubv10022138m  15 ILLIDHDATSVASLTSMLEQFSK-RVMSVDAASKALSMIEKQKkdIGIVIANIEMPQIDSHSFLTALLQRN--IPLILINPEIRTKKPSDLLKN 105
                      799****************8888.999999999999999666556**********************8877..899999888888888888888 PP

                      TESEEEESS--HHHHH CS
     Response_reg  93 GakdflsKpfdpeelv 108
                       a   l Kp+++ ++ 
  Carubv10022138m 106 SACFSLDKPISEIDIK 121
                      8877777777777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.1E-1212143IPR011006CheY-like superfamily
PROSITE profilePS5011022.89914128IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23002.5E-1414143No hitNo description
PfamPF000729.3E-815122IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.05E-616128No hitNo description
SuperFamilySSF466896.9E-14226282IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.3E-17229282IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-15229277IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MAENVIPQCV NDIFILLIDH DATSVASLTS MLEQFSKRVM SVDAASKALS MIEKQKKDIG  60
IVIANIEMPQ IDSHSFLTAL LQRNIPLILI NPEIRTKKPS DLLKNSACFS LDKPISEIDI  120
KNMWQRVLSR QSQEFKKINM AENQENAIDK DIDEIENFRA SLKRQRTSQA SLLGQRNFIK  180
PYTTSEAYHK RKGMANIEWK TKPCYQNEVE NRRKEWMKVD DNVGRRMSLW TNERHMKFLA  240
AISILGDNDL RPKSILEIMN DPNLTQRQIA SHLQKYKAQI ERISDVLPRN EWKSTDKTIE  300
YPSDYDYPFK ASYLTKNVIA SNSLWCCLRK KNLSSSSSIN QFSLKNPIDA RKKSMPKLHR  360
GKKLDLSNHS HSGNILNKSS MNVDYVPSTI SSNLAYDNYP IDNANHIGMV STGVGSEILP  420
MISNLPNTCA SQMETARISI PHYDPNPLHP HNLVLETSVN QIDLDFTSIP DSFFPQADSC  480
NLEENYFLPN NIMSPLETNI DQMNLAPSIE NHSHHGINII QSEVDNPIDI GFSEVSILPQ  540
EESTNHMGIV SCETNMSNFE TNANEDFDIP IEDLISFDTD IEKDMASWLE ESGFSERNNH  600
LSQSYLNHNV AFRKPMDSTP DTSVVGHDQS IAMNMGSARM PHNTMESSEY HNAEAGKQND  660
NIEGGGDFED YRDYIDWIDE E
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10022138m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023644293.10.0putative two-component response regulator-like APRR6
SwissprotQ9C9F60.0APRR6_ARATH; Putative two-component response regulator-like APRR6
TrEMBLR0I9140.0R0I914_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006301682.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136851424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68210.10.0pseudo-response regulator 6