PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10022099m
Common NameCARUB_v10022099mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 326aa    MW: 37719.8 Da    PI: 9.6239
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10022099mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM38.73e-121512611128
              NAM  11 deelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglk 103
                      de +++++Lk+ v + +   e++i++vd+++ +P+     +++  +   f + + +++ +g       k g W+  g+dk ++s+ +g++ g k
  Carubv10022099m  15 DEVIISRFLKRMVINGDSMPEHFIQDVDVFNKNPNVE---FDS-GSPA-FVIVKPRTEDSGITDG--CKLGCWRIIGRDKLIKSEkTGKVLGFK 101
                      88899******987777555488***********643...222.3344.4555555554454443..4689************98678889*** PP

              NAM 104 ktLvfykgrapkgektdWvmheyrl 128
                      k+L f  +r+p+  + +Wvm+e+rl
  Carubv10022099m 102 KILKFCVKRKPREYNRSWVMEEFRL 126
                      ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.9995144IPR003441NAC domain
PfamPF023655.3E-714126IPR003441NAC domain
SuperFamilySSF1019417.32E-2415143IPR003441NAC domain
PROSITE profilePS5100513.043173321IPR003441NAC domain
SuperFamilySSF1019411.57E-14173320IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MANELDNVGL SNVEDEVIIS RFLKRMVING DSMPEHFIQD VDVFNKNPNV EFDSGSPAFV  60
IVKPRTEDSG ITDGCKLGCW RIIGRDKLIK SEKTGKVLGF KKILKFCVKR KPREYNRSWV  120
MEEFRLTNNL NKKQGHVLCK IRFLFEAETS SLLAKHFSYL PTTEAVPVPA TITLPGYGNK  180
PQTPQMDNES YLLQLILPSG ENNWPSYVTN NVYRLNPWKL VNFRDRVFLK LGICIYANET  240
CRDTDVCDGG KWMILHPERL IRSTSGETIG FKKVFQFYAT KKRYQLLKWR SKYKKVTCTI  300
EEYRRAEMLM QNKVLCVIKL TFEDN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10022099m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301654.20.0uncharacterized protein LOC17896467
TrEMBLR0GFG40.0R0GFG4_9BRAS; Uncharacterized protein
STRINGXP_006301654.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37041459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60300.11e-130NAC family protein