PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10021899m
Common NameCARUB_v10021899mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 248aa    MW: 28053.8 Da    PI: 5.5814
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10021899mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY67.22.6e-21102162259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg++WrKYGqK++k s++ r YYrC++a   +C+ +k+v++ +++p +  ++Y g+H ++
  Carubv10021899m 102 NDGFTWRKYGQKNIKTSPYQRCYYRCSYAkdlNCKCTKRVQKIKDNPPLYRTIYVGKHVCK 162
                      7***************************99999*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081117.95996159IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.6E-2298162IPR003657WRKY domain
SuperFamilySSF1182901.01E-2099162IPR003657WRKY domain
SMARTSM007744.9E-29101163IPR003657WRKY domain
PfamPF031061.2E-21102162IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MVSNIDHKAV GALLHGQECA NSLKKLFDNG DISLGSTESL IDTILDTFSL ALSCMDAPNP  60
PQHYESSFGN MAGFVLQRSS KKKICAMESI ENYKDSPTPR PNDGFTWRKY GQKNIKTSPY  120
QRCYYRCSYA KDLNCKCTKR VQKIKDNPPL YRTIYVGKHV CKAFTVHDDD TYGSEMIKFD  180
QVLSEPVMPQ LATIDHQATT MAMEDIAIDH AMNQECDIND ILVDYDQFWA NQFPSGDTMF  240
LDNLCFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-13102162969OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10021899m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301477.10.0probable WRKY transcription factor 64
SwissprotQ9C5571e-117WRK64_ARATH; Probable WRKY transcription factor 64
TrEMBLR0I8F10.0R0I8F1_9BRAS; Uncharacterized protein
STRINGXP_006301477.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56091847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66560.11e-119WRKY DNA-binding protein 64