PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10021818m
Common NameCARUB_v10021818mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 321aa    MW: 37334.8 Da    PI: 7.3758
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10021818mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM44.83.9e-141012111128
              NAM  11 deelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglk 103
                      d+ lv++yLk+ v + +   +++ik+ d+++ +P++     +++ + ++  + + ++++ g ++    ksg W+  g+dk ++s+ +ge+ g k
  Carubv10021818m  10 DDVLVSRYLKPMVVNGDSWHQHFIKDEDVFNKNPSEDF---DTG-SPTF-VIVKPRTENYG-KTD-GCKSGCWRIIGRDKLIKSEkTGEVLGFK 96 
                      7789********99999777688***********8752...232.3333.33333433333.333.3579*************9867889**** PP

              NAM 104 ktLvfykgrapkgektdWvmheyrl 128
                      k+L f  +++p+g k +W+m+e+rl
  Carubv10021818m  97 KILKFCVQKKPRGYKRSWLMEEFRL 121
                      ***********************98 PP
2NAM27.96.4e-0920329936127
              NAM  36 evdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlskkgelvglkktLvfy.........kgrapkgekt 119
                      + d+y+++Pw+L + +     +  fF       ++g+     + + gyW+    d+ v sk+ge +g kk++ +y         +g++ + +k 
  Carubv10021818m 203 TNDLYRLNPWKLVNLY-----DPKFFRLGTCFFTNGTCGVTdVCDGGYWRILHPDRLVRSKSGEPIGFKKVFQYYetkkhryfcEGEEIQDRKV 291
                      4599********7322.....2346666666666666554448899*****************************88777777779999999** PP

              NAM 120 dWvmheyr 127
                      +W+++eyr
  Carubv10021818m 292 TWTIEEYR 299
                      *******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100524.81139IPR003441NAC domain
PfamPF023653.8E-89121IPR003441NAC domain
SuperFamilySSF1019415.23E-2610137IPR003441NAC domain
SuperFamilySSF1019414.32E-21163315IPR003441NAC domain
PROSITE profilePS5100518.57168316IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MDDELIIAED DVLVSRYLKP MVVNGDSWHQ HFIKDEDVFN KNPSEDFDTG SPTFVIVKPR  60
TENYGKTDGC KSGCWRIIGR DKLIKSEKTG EVLGFKKILK FCVQKKPRGY KRSWLMEEFR  120
LTDNLNKKQD HVICKIRLLF EAETSSLLAK HFSYLPTTKA VPVPATIILP AYGYESPDPQ  180
MDDESYVLMI PDSEGNTWPS YVTNDLYRLN PWKLVNLYDP KFFRLGTCFF TNGTCGVTDV  240
CDGGYWRILH PDRLVRSKSG EPIGFKKVFQ YYETKKHRYF CEGEEIQDRK VTWTIEEYRR  300
AEIAMQNKVL CVIKFTFEDN *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10021818m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006300421.10.0NAC domain-containing protein 43
TrEMBLR0HTX80.0R0HTX8_9BRAS; Uncharacterized protein
STRINGXP_006300421.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37041459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60350.11e-145NAC domain containing protein 24