PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10021596m
Common NameCARUB_v10021596mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 310aa    MW: 35242.7 Da    PI: 6.5127
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10021596mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.1e-13122173155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+ +N+ ++ Lr+l+P +   + ++ + a+i+  ++++Ik+L+
  Carubv10021596m 122 QRMTHIAVERNRRKMMNEYLSVLRSLMPDS---YVQRCDQASIVGGTINFIKQLE 173
                      79****************************...9*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.205121172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.3E-14121182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.96E-11121177No hitNo description
Gene3DG3DSA:4.10.280.108.3E-13121177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-10122173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-8127178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MALESVFLQH DNIYSYNGKE AYSNIYIEDE PHFYDLQASL NFFDNRIENY NSTFLQEDHY  60
YENTTTFLHQ PLPDEIAISE ANITPKENSS GSPNREINTS GTKKATRRRT RVKKNKEEIN  120
NQRMTHIAVE RNRRKMMNEY LSVLRSLMPD SYVQRCDQAS IVGGTINFIK QLEHRLHHSN  180
ANSKQNENGN ISSATAPFSD AFKLPQFTME TSSSVSENVV LENSLADIEV SLVESHACLK  240
IRSRKRPKLL LNLVSTLQSL GFVILHLNVS TVSDFILYCF STKMEDSCTL TSVAEIATAV  300
YEMLKSMLA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122133RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10021596m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023643351.10.0transcription factor bHLH94
SwissprotQ9C7T43e-62BH096_ARATH; Transcription factor bHLH96
TrEMBLR0GEN30.0R0GEN3_9BRAS; Uncharacterized protein
STRINGXP_006301198.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142991821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-54bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]