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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Carubv10021561m |
Common Name | CARUB_v10021561mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family |
SRS |
Protein Properties |
Length: 335aa MW: 37103.4 Da PI: 7.1124 |
Description |
SRS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Carubv10021561m | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF702 | 227.5 | 2.5e-70 | 104 | 272 | 2 | 154 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel.............kskk 82
r+g+++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakrrer +qla++++++++s++++++kr re +
Carubv10021561m 104 RQGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASLQHHSTSSRETQNTKRLREAsggdnnnnddkdhSGGG 197
7899*********************************************************999995555555555555555555555447788 PP
DUF702 83 qsalsstklssaeskkeletss.lPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154
sal++t++++++s++ le+s+ lP+ev+s+avfrcvrvss+++ +++e+aYqtav+igGhvfkGiLydqG+++
Carubv10021561m 198 GSALANTRVVNTNSNSGLEVSQhLPPEVNSPAVFRCVRVSSIEEdeDDQEYAYQTAVNIGGHVFKGILYDQGPDQ 272
899*************9998776*******************98535567***********************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 335 aa
Download sequence Send
to blast |
MAGFFYLGGR DNNSKQDHHQ DKNYLYLYKD EIYNNNKGFE IWPPQYFQQQ EQPQQQQHAS 60 APANFYSFGM VPSGSSSNNN NSRSRSLYFN VVSDHEPGGF TVTRQGGMNC QDCGNQAKKD 120 CPHMRCRTCC KSRGFHCQTH VKSTWVPAAK RRERLAQLAS LQHHSTSSRE TQNTKRLREA 180 SGGDNNNNDD KDHSGGGGSA LANTRVVNTN SNSGLEVSQH LPPEVNSPAV FRCVRVSSIE 240 EDEDDQEYAY QTAVNIGGHV FKGILYDQGP DQDHHHHHLN LLASTATTTN VEETATKTVA 300 GNNSNGLMLD PSSLYPAQLN SFIAGTSFFT PPRS*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY800620 | 0.0 | AY800620.1 Arabidopsis thaliana clone H0000001204 hypothetical protein (AT1G75520) mRNA, complete cds. |
GenBank | AY924730 | 0.0 | AY924730.1 Arabidopsis thaliana hypothetical protein (At1g75520) mRNA, complete cds. |