PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10021540m | ||||||||
Common Name | CARUB_v10021540mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 164aa MW: 18728.1 Da PI: 9.844 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 44.2 | 2.4e-14 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i +++ r vtf kR++g+lKK +EL +LC+ ++ ii+ + Carubv10021540m 11 ITDNTTRRVTFQKRKAGLLKKINELTILCGLPACAIIYNE 50 789999*******************************965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 17.689 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.1E-16 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 3.49E-20 | 2 | 85 | No hit | No description |
SuperFamily | SSF55455 | 7.06E-21 | 2 | 94 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-8 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-14 | 11 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-8 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MGRRKVTHQL ITDNTTRRVT FQKRKAGLLK KINELTILCG LPACAIIYNE YKDGPELWPN 60 VNEVRSLLDR LSKLPVEKQI KYMMDQKDLM EKMIQDAEKK LEKEKMHTRA MNLGIMASTN 120 DLTTESDCSE ELVKAAKVVD KKLKLIQERI KAVEAGAPII MRD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10021540m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC254601 | 0.0 | AC254601.1 Capsella rubella clone CAP30-M05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006301142.1 | 1e-117 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | R0I7K5 | 1e-115 | R0I7K5_9BRAS; Uncharacterized protein | ||||
STRING | XP_006301142.1 | 1e-116 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22590.2 | 2e-93 | AGAMOUS-like 87 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10021540m |
Entrez Gene | 17894539 |