PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10021479m
Common NameCARUB_v10021479mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 350aa    MW: 39629 Da    PI: 5.6936
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10021479mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.58.8e-31206265159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  Carubv10021479m 206 MNDGCQWRKYGQKTAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILITTYEGTHNHP 265
                      58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.7E-33191267IPR003657WRKY domain
SuperFamilySSF1182905.1E-28199267IPR003657WRKY domain
PROSITE profilePS5081129.023201267IPR003657WRKY domain
SMARTSM007741.9E-37206266IPR003657WRKY domain
PfamPF031061.2E-27207265IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MGIDLSLKLE AEEKEKNIEE ESKHSGDDEE HDASGDEDEQ MVKEDEEEDS CLGSRTREEE  60
NEREELLQLQ IQMESVKEEN TRLRKLVEQT LEDYRHLEMK FPVIDQTKKM GLETFLGAKG  120
KWYVDITSKA RKRGAETSPS VERELGLSLS LQKKQKQEES KEAVQSHQQR YNNNSLDMNG  180
PRIISSSQGN RKARVSVRAR CETATMNDGC QWRKYGQKTA KGNPCPRAYY RCTVAPGCPV  240
RKQVQRCLED MSILITTYEG THNHPLPVGA TAMASTASTS PFLLLDSSDN LTHPSSYYHQ  300
TPPIMDSSLI TYPQNSSSSN NRTIRSLNFD GPSRGDHVSS SQNRLNWMM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-23193269176WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130155RKRGAETSPSVERELGLSLSLQKKQK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10021479m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by potassium deprivation. {ECO:0000269|PubMed:15173595}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935250.0AB493525.1 Arabidopsis thaliana At1g68150 mRNA for hypothetical protein, partial cds, clone: RAAt1g68150.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023643435.10.0probable WRKY transcription factor 9
SwissprotQ9C9F00.0WRKY9_ARATH; Probable WRKY transcription factor 9
TrEMBLR0I7F20.0R0I7F2_9BRAS; Uncharacterized protein
STRINGXP_006301087.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67362741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.11e-159WRKY DNA-binding protein 9