PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10021425m
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family M-type_MADS
Protein Properties Length: 116aa    MW: 13076.8 Da    PI: 10.0476
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10021425mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.51.3e-11654149
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     k+ie +  r v +skRrngi  K  ELSvL ++ +a + +  +gk +++
  Carubv10021425m  6 KKIEKSKDRLVKLSKRRNGIYTKLCELSVLSGVHIAFLGYTDSGKPFTF 54
                     689******************************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.7E-10157IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.661158IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.55E-18175IPR002100Transcription factor, MADS-box
PfamPF003191.1E-13754IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-52035IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-53556IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
QKIDIKKIEK SKDRLVKLSK RRNGIYTKLC ELSVLSGVHI AFLGYTDSGK PFTFGSPSFQ  60
AVAERFLNSE ASSSSSLQQS IFTVHHKQNF EGLYEKLCDE IDVRSQRRDA ARNHI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10021425m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301053.12e-48agamous-like MADS-box protein AGL29
TrEMBLR0GCL42e-57R0GCL4_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006300579.14e-58(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46761352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.19e-31AGAMOUS-like 64