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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10021322m | ||||||||
Common Name | CARUB_v10021322mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | bHLH | ||||||||
Protein Properties | Length: 300aa MW: 32341.4 Da PI: 6.8026 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.6 | 6.1e-10 | 210 | 251 | 9 | 55 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++RR+ri +++ L+el+P+ +K++ +++LekA+ Y+k Lq Carubv10021322m 210 AKNRRERISERLKILQELVPNG-----TKVDLVTMLEKAISYVKFLQ 251 69******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.82E-12 | 199 | 255 | No hit | No description |
SuperFamily | SSF47459 | 1.44E-13 | 201 | 261 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.8E-12 | 201 | 258 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.32 | 201 | 250 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.0E-12 | 207 | 256 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.5E-7 | 210 | 251 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048766 | Biological Process | root hair initiation | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MALVNDHPNE PNYMAKQNSS SSEDLSSPGL DQPETAYAGG GGGGGSASSS STMNSDHQQH 60 QGFVFYQSGE DHHHNSLMDF NGSSFLNFDH HETFPPPAIS CGGSSGASGF SFLEGNNMSY 120 GFTNWNQHHM DIISPRSTET PQGQKDWLYS DSTVVTTGSR HESMSPKSAG NKRSHTGEST 180 QPSKKPSNGV NGKAKPKPST SPKDPQSLAA KNRRERISER LKILQELVPN GTKVDLVTML 240 EKAISYVKFL QVQVKVLATD EFWPAQGGKA PDISQVKDAI DAILSSSQRD RTNSNLITN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10021322m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY128310 | 0.0 | AY128310.1 Arabidopsis thaliana unknown protein (At1g66470) mRNA, complete cds. | |||
GenBank | BT006320 | 0.0 | BT006320.1 Arabidopsis thaliana At1g66470 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006300942.1 | 0.0 | transcription factor bHLH83 | ||||
Swissprot | Q9C707 | 1e-178 | BH083_ARATH; Transcription factor bHLH83 | ||||
TrEMBL | R0I6Z2 | 0.0 | R0I6Z2_9BRAS; Uncharacterized protein | ||||
STRING | XP_006300942.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4260 | 28 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66470.1 | 1e-172 | ROOT HAIR DEFECTIVE6 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10021322m |
Entrez Gene | 17895364 |