PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10021319m
Common NameCARUB_v10021319mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 336aa    MW: 39418.5 Da    PI: 4.9641
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10021319mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM49.91e-15161317128
              NAM   7 FhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                      F+  dee+++++Lk+ + + +   e++i++vd+++ +P++     ++  ++  f + r ++++ gk  +   +sg W+  g+dk ++s+ +g+ 
  Carubv10021319m  16 FNADDEEIISRFLKRMIVNGDSWPEHFISDVDVFNKNPNEEF---YS--QSPKFLIVRPRTESCGKTDS--CESGCWRVIGRDKLIKSEqTGKF 102
                      7889************88888555588***********9863...23..33457777777776665444..579*************9866777 PP

              NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                       g k++L f ++r+p+  k  Wvm+eyrl
  Carubv10021319m 103 LGFKRILKFCSKRKPREYKRIWVMEEYRL 131
                      ***************************98 PP
2NAM21.94.7e-0719231317128
              NAM  17 eyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvf 108
                      +yL+  v+ +++++     + d+y+++P +L   +  k +e  +  F++r ++     ++      gyW+   +++ + sk+ge  g ++++ +
  Carubv10021319m 192 YYLQTIVDYDENTTWPRYVTNDVYRLHPLTLVdpQDDKFKEFGTCVFANRTNTC---GKTGDCDGGGYWEIVQSHRGIRSKTGEILGYRRVFEL 282
                      788888888887775667888**********52122222333557777776654...456667789**************************** PP

              NAM 109 y...........kgrapkgektdWvmheyrl 128
                                  +  + + +k +W+++eyrl
  Carubv10021319m 283 VeededeeeepgNVCQGEDVKESWLIDEYRL 313
                      *655443333222233344599*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100527.69910148IPR003441NAC domain
PfamPF023651.5E-916131IPR003441NAC domain
SuperFamilySSF1019415.1E-2616147IPR003441NAC domain
PROSITE profilePS5100516.446175329IPR003441NAC domain
SuperFamilySSF1019413.66E-19191327IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MENEVDYYVQ IKDELFNADD EEIISRFLKR MIVNGDSWPE HFISDVDVFN KNPNEEFYSQ  60
SPKFLIVRPR TESCGKTDSC ESGCWRVIGR DKLIKSEQTG KFLGFKRILK FCSKRKPREY  120
KRIWVMEEYR LVNSRRKQDQ VICKIRFLFE AEVSYLLSKH FSYLSTTSPL PPVQLLPAYG  180
ACLFDKEAEG LYYLQTIVDY DENTTWPRYV TNDVYRLHPL TLVDPQDDKF KEFGTCVFAN  240
RTNTCGKTGD CDGGGYWEIV QSHRGIRSKT GEILGYRRVF ELVEEDEDEE EEPGNVCQGE  300
DVKESWLIDE YRLDDKEKQN KVLCLIRKFS ASSYY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10021319m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006300928.10.0uncharacterized protein LOC17894868
TrEMBLR0GDW50.0R0GDW5_9BRAS; Uncharacterized protein
STRINGXP_006300928.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37041459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60280.11e-160NAC domain containing protein 23