PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10020979m | ||||||||
Common Name | CARUB_v10020979mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 198aa MW: 22263.3 Da PI: 5.4668 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 69.9 | 2.3e-22 | 9 | 56 | 1 | 48 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 krienks rqvtfskRrng++ KA LS+LCd vav+++s +gkly Carubv10020979m 9 KRIENKSSRQVTFSKRRNGLIDKARQLSILCDSSVAVVVVSASGKLYN 56 79********************************************96 PP | |||||||
2 | K-box | 36.1 | 2.8e-13 | 95 | 164 | 29 | 98 |
K-box 29 enLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 e L+ q +l ++++Ls+ L +Le+qLe++l+ R++K+el++e+++ lq e+ l+een+ L +++ Carubv10020979m 95 ELLEIVQSNLEETNINNLSVDFLISLEEQLENALSVSRARKTELMMESLKSLQGEENLLREENQVLASQM 164 66777888899999***************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.231 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.4E-34 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.29E-27 | 1 | 72 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.1E-24 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.0E-22 | 10 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.1E-24 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.1E-24 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 11.173 | 80 | 170 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 2.4E-9 | 96 | 164 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010221 | Biological Process | negative regulation of vernalization response | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MGRRKIEIKR IENKSSRQVT FSKRRNGLID KARQLSILCD SSVAVVVVSA SGKLYNSCSG 60 DDMSKIIERY EIQHADELKA LDLAEKTRNY LPHKELLEIV QSNLEETNIN NLSVDFLISL 120 EEQLENALSV SRARKTELMM ESLKSLQGEE NLLREENQVL ASQMGKKNTF LATEDERGIS 180 PENSSGNQIP ETLPLLK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 2e-16 | 1 | 70 | 1 | 69 | MEF2 CHIMERA |
6byy_B | 2e-16 | 1 | 70 | 1 | 69 | MEF2 CHIMERA |
6byy_C | 2e-16 | 1 | 70 | 1 | 69 | MEF2 CHIMERA |
6byy_D | 2e-16 | 1 | 70 | 1 | 69 | MEF2 CHIMERA |
6bz1_A | 2e-16 | 1 | 70 | 1 | 69 | MEF2 CHIMERA |
6bz1_B | 2e-16 | 1 | 70 | 1 | 69 | MEF2 CHIMERA |
6bz1_C | 2e-16 | 1 | 70 | 1 | 69 | MEF2 CHIMERA |
6bz1_D | 2e-16 | 1 | 70 | 1 | 69 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that prevents vernalization by short periods of cold. Acts as a floral repressor. {ECO:0000269|PubMed:12724541, ECO:0000269|PubMed:19139056, ECO:0000269|PubMed:20551443}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10020979m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Requires EARLY FLOWERING 7 (ELF7) and ELF8 to be expressed. Up-regulated by HUA2. {ECO:0000269|PubMed:15520273, ECO:0000269|PubMed:15659097}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF342808 | 0.0 | AF342808.1 Arabidopsis thaliana MADS affecting flowering 1 (MAF1) mRNA, complete cds. | |||
GenBank | AK117577 | 0.0 | AK117577.1 Arabidopsis thaliana mRNA for (NM_148660) MADS affecting flowering 1(MAF1); protein id: At1g77080.4, supported by cDNA: 92459., supported by cDNA: gi_13649968, supported by cDNA: gi_16580104 [Arabidopsis thaliana] gb|AAK37527.1|AF342808_1 (AF342808) MADS affecting flowering 1 [Arabidopsis thaliana] gb|AAK54440.1| (AY034083) MADS box FLC1-like nuclear protein [Arabidopsis thaliana] gb|AAM67028.1| (AY088709) MADS affecting flowering 1 [Arabidopsis thaliana], complete cds, clone: RAFL17-22-J12. | |||
GenBank | AK175247 | 0.0 | AK175247.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL21-67-N06. | |||
GenBank | AK176270 | 0.0 | AK176270.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL23-17-J21. | |||
GenBank | AK227948 | 0.0 | AK227948.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-50-E05. | |||
GenBank | AY034083 | 0.0 | AY034083.1 Arabidopsis thaliana MADS box FLC1-like nuclear protein (FK1) mRNA, complete cds. | |||
GenBank | AY088709 | 0.0 | AY088709.1 Arabidopsis thaliana clone 92459 mRNA, complete sequence. | |||
GenBank | BT004598 | 0.0 | BT004598.1 Arabidopsis thaliana At1g77080 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006302848.1 | 1e-140 | agamous-like MADS-box protein AGL27 | ||||
Swissprot | Q9FPN7 | 1e-108 | AGL31_ARATH; Agamous-like MADS-box protein AGL31 | ||||
TrEMBL | R0GJ27 | 1e-139 | R0GJ27_9BRAS; Uncharacterized protein | ||||
STRING | XP_006302848.1 | 1e-139 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM986 | 19 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77080.4 | 1e-104 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10020979m |
Entrez Gene | 17895692 |
Publications ? help Back to Top | |||
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