PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10020804m
Common NameCARUB_v10020804mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 267aa    MW: 30066.3 Da    PI: 8.4146
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10020804mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.46.2e-1480132155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      ++ +h  +Er+RR+++ s f  Lr+llP       ++K s ++   +Av+YIk+Lq
  Carubv10020804m  80 KKLKHRDIERQRRQEVSSLFKSLRSLLPFqY---IQGKRSTSDHIFQAVQYIKDLQ 132
                      5789*************************66...*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-1576149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.33E-1377136No hitNo description
PROSITE profilePS5088814.26579131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-1180132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.9E-1281148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-585137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MDFVPSLFMP DSTSYEDGLL FSDSFLLSSF VSSNQNHDVC EPITNKIDHG ISKKKRSLCD  60
TYGVMSDEAN KNDVDDRETK KLKHRDIERQ RRQEVSSLFK SLRSLLPFQY IQGKRSTSDH  120
IFQAVQYIKD LQNKNKELNE KRNRIKKSIP GTNAATLPST EECTSSLSSS TTSTLSLSCS  180
CVGDKHFTVV VTPCLVGVEI IVSCCLRRNK SCLSSVLQIL AQEQKLSVVS CISTRLQQRF  240
MHTIVSQVDD TKQINILELR DKIVNM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10020804m
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302694.10.0transcription factor bHLH125
SwissprotQ9LQ081e-126BH125_ARATH; Transcription factor bHLH125
TrEMBLR0GI840.0R0GI84_9BRAS; Uncharacterized protein
STRINGXP_006302694.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62281843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62975.11e-97bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]