PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10020657m
Common NameCARUB_v10020657mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 323aa    MW: 36043 Da    PI: 5.0399
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10020657mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH474.4e-15122173155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A+ Y+k+L+
  Carubv10020657m 122 QRMTHIAVERNRRKQMNEYLAVLRSLMPPS---YAQRGDQASIVGGAISYLKELE 173
                      79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-16120185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.00E-13120177No hitNo description
Gene3DG3DSA:4.10.280.106.2E-14121177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.361121172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-12122173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-11127178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MALEAVVYPQ DPFSYISCKD FPFHDLYFQE EEDRDPQDTK NNIKLGQGQE HVFASNNYNG  60
KSGDNSDDYN YTEEDLQWPR DIPFGSAVDT KNQPPPLDVA AGGRRKRRRT RSSKNKEEIE  120
NQRMTHIAVE RNRRKQMNEY LAVLRSLMPP SYAQRGDQAS IVGGAISYLK ELEHHLQSIE  180
PPVKTAAEDT EAGRDQTDTV AAASSSGPFS DFFAFPQYSN QPTSAAAAEG MAEIEVTMVE  240
SHASLKILAK KRPRQLLKLV ASIQSLRLTL LHLNVTTRDD SVLYSISVKV EEGSQLNTVE  300
DIAAAVNQIL RRIEEESSFS GS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104108RKRRR
2104109RKRRRT
3122133RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10020657m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4597710.0AJ459771.1 Arabidopsis thaliana mRNA for basic-helix-loop-helix transcription factor (bHLH096 gene).
GenBankBT0038710.0BT003871.1 Arabidopsis thaliana clone RAFL15-42-L08 (R20946) putative bHLH protein (At1g72210) mRNA, complete cds.
GenBankBT0060860.0BT006086.1 Arabidopsis thaliana clone U20946 putative bHLH protein (At1g72210) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302555.10.0transcription factor bHLH96
SwissprotQ9C7T40.0BH096_ARATH; Transcription factor bHLH96
TrEMBLR0IFC40.0R0IFC4_9BRAS; Uncharacterized protein
STRINGXP_006302555.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]