PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10020654m
Common NameCARUB_v10020636mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 324aa    MW: 35842.8 Da    PI: 9.5623
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10020654mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.97.1e-113990147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT eE+e l+ +++++G+g Wk I r         +R+  ++k++w+++
  Carubv10020654m 39 KLKWTGEEEEALLAGIAKHGPGKWKNILRDPEfadqlIHRSNIDLKDKWRNL 90
                     689*********************************999***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.8063495IPR017930Myb domain
SuperFamilySSF466892.73E-153794IPR009057Homeodomain-like
SMARTSM007176.8E-83893IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-133891IPR009057Homeodomain-like
PfamPF002494.0E-73990IPR001005SANT/Myb domain
CDDcd116606.91E-204190No hitNo description
SuperFamilySSF467858.16E-14156239IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005262.3E-15157222IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.7E-9158238IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150421.279159227IPR005818Linker histone H1/H5, domain H15
PfamPF005386.3E-7161220IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
ARTNETSGDK SASDSDRAYA SRRREHKVKL HKAVMGNQKL KWTGEEEEAL LAGIAKHGPG  60
KWKNILRDPE FADQLIHRSN IDLKDKWRNL SVPPGNQGSN YKARPIKVKE EGVTPPPVTI  120
VDNINPPPIV KPIIPPVPSI QRNDLINDES FNIVVDTKNA PRYDGMIFEA LSSLADANGS  180
DVSSIFHFIE PRHEVPPNFR RILSSRLRRL AAQSKLVKLQ NFYKIPDPSG TRTPAPKPKE  240
THVKPRQSNN QASAISQQMI DEASITAACK VVEAENKIDI ARVAGEEFAK ITKLAEGSEH  300
LLVIANEMHE QCSRGETVVL ACV*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00231DAPTransfer from AT1G72740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10020654m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3729251e-105AF372925.1 Arabidopsis thaliana At1g72740/F28P22_7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302535.20.0telomere repeat-binding factor 5 isoform X2
SwissprotF4IEY41e-141TRB5_ARATH; Telomere repeat-binding factor 5
TrEMBLR0IFA60.0R0IFA6_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006302536.10.0(Capsella rubella)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.21e-121MYB_related family protein
Publications ? help Back to Top
  1. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]