PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10020559m
Common NameCARUB_v10020559mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HSF
Protein Properties Length: 352aa    MW: 40090 Da    PI: 4.5618
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10020559mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind92.93.7e-291869102
                      HHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXX CS
     HSF_DNA-bind   9 iledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkk 101
                      +++d++++++isws +  nsfv+ld++ f+ ++LpkyFkhsnf+SF+RQLn+YgFkkv+ +          weF+++ F kg+k+ll+++ r+k
  Carubv10020559m   1 MVDDSSTDSIISWStSADNSFVILDTTVFSVQLLPKYFKHSNFSSFIRQLNIYGFKKVDADC---------WEFANDGFVKGQKDLLKNVIRRK 85 
                      899***********7778****************************************9987.........******************99998 PP

                      X CS
     HSF_DNA-bind 102 s 102
                      +
  Carubv10020559m  86 N 86 
                      7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF004474.1E-25184IPR000232Heat shock factor (HSF)-type, DNA-binding
SMARTSM004159.8E-42184IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.2E-28184IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.22E-26184IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.3E-93345IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043403458IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-94658IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MVDDSSTDSI ISWSTSADNS FVILDTTVFS VQLLPKYFKH SNFSSFIRQL NIYGFKKVDA  60
DCWEFANDGF VKGQKDLLKN VIRRKNIQSN DQSKQESKST TDAQEKPEKS GLWKEVDILK  120
GDKKALAQEL IKVRQYQEIT DTKMVHLKDR VQGMEESQQE MLSFLVMVMK NPSLLVQLLQ  180
PKEKNSWRKA GEGATIVEEV TDEGESNSYG LPLVTYQPPA DNGTSKSSSN DLNDFLRNAD  240
MLKFCLDENH VPLIIPDLYD DGAWEKLLLL SPSRKKTKKQ ENNVKKGKDD PTLEEEDEED  300
GTMESDKSRM LELISKEMER SDDFEYGQLT PERSRNLDIL TEQMSVLASN E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-1918436129Heat shock factor protein 1
5d5v_B5e-1918436129Heat shock factor protein 1
5d5v_D5e-1918436129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10020559m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2518660.0AJ251866.1 Arabidopsis thaliana mRNA for heat shock factor 5 (hsf5 gene).
GenBankAY0943960.0AY094396.1 Arabidopsis thaliana At1g67970/T23K23_18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302467.20.0LOW QUALITY PROTEIN: heat stress transcription factor A-8
SwissprotQ9S7U50.0HSFA8_ARATH; Heat stress transcription factor A-8
TrEMBLR0IB460.0R0IB46_9BRAS; Uncharacterized protein
STRINGXP_006302467.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70452637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.10.0heat shock transcription factor A8