PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10020420m
Common NameCARUB_v10020420mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 396aa    MW: 43394.6 Da    PI: 5.6388
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10020420mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.21.1e-062803181154
                      HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       R +++++ +  L++l+ +      +K + a++L++A+eYIk L
  Carubv10020420m 280 VRKENLRDQITSLQQLVSPF-----GKTDTASVLQEAIEYIKFL 318
                      5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.935269318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-9279329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-11279333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.47E-6279322No hitNo description
SMARTSM003530.0071279324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MAEEFQATAA ICGGGGGAWW NSPRSVMSPS DHFLSPCFGA AITSDDFSSQ ENNIKSRITC  60
TDNNIVFGQR EADSDSGGST VTIDSTLQMM GLGFSSNSST DWNQTILQED LNSNFIRSSQ  120
DQDHGQGFLP TTTSPYILNP ACSSSPSTSS SSSLLRTFYE PEPSPYNFIS TTSASINDPQ  180
LSWANKTNPH HQPAYGLVNN FTNNTNSRPF WSSSPTTNIN NTTPNNFVTT PQIISTRLED  240
KTKNLKTRAQ SESLKRAKDN ESAAKKPRVT TPSPLPTFKV RKENLRDQIT SLQQLVSPFG  300
KTDTASVLQE AIEYIKFLHD QVTVLSTPYM KQGASSQQQQ QQQQISGKSK NEDENENHEL  360
RAHGLCLVPI SSTFPVANET TADFWTPTFG GNNFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10020420m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3806490.0AF380649.1 Arabidopsis thaliana At1g61660/T13M11_21 mRNA, complete cds.
GenBankAY1130720.0AY113072.1 Arabidopsis thaliana At1g61660/T13M11_21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006300501.10.0transcription factor bHLH112 isoform X3
SwissprotQ94JL30.0BH112_ARATH; Transcription factor bHLH112
TrEMBLR0HU650.0R0HU65_9BRAS; Uncharacterized protein
STRINGXP_006300501.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80622636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen HC, et al.
    The function of OsbHLH068 is partially redundant with its homolog, AtbHLH112, in the regulation of the salt stress response but has opposite functions to control flowering in Arabidopsis.
    Plant Mol. Biol., 2017. 94(4-5): p. 531-548
    [PMID:28631168]