PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10020226m
Common NameCARUB_v10020210mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MIKC_MADS
Protein Properties Length: 475aa    MW: 53446.5 Da    PI: 8.8016
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10020226mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.52.2e-202162445
                     -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
           SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                     ++   rq t++kR++gi+KKA+ELS+LCd++v +++fs+tgk
  Carubv10020226m 21 QSMNARQSTYAKRKHGIMKKAKELSILCDIDVVLLMFSPTGK 62
                     566789**********************************98 PP
2K-box14.71.2e-062012384784
            K-box  47 slkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                      +l +LqqLe+ L  sl +i ++K  +   q ++l   e
  Carubv10020226m 201 NLDDLQQLEHSLRLSLAQISARKASMPQLQRRQLMSSE 238
                      789********************987665555554444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.8E-271069IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.4831062IPR002100Transcription factor, MADS-box
CDDcd002665.56E-211193No hitNo description
SuperFamilySSF554556.54E-2311101IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-141232IPR002100Transcription factor, MADS-box
PfamPF003191.7E-172263IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-143247IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-144768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MSGPIIKSGM GRVKLKIKKL QSMNARQSTY AKRKHGIMKK AKELSILCDI DVVLLMFSPT  60
GKASLCIGKH SIGEVIAKFA QVIPQERTKR KLDSLEALRK MFVKIDHVVD ISGFLDRSTP  120
AVEVCNTTSM MLINNYDAEV SPNSRLLSGA KRKIQVSANT VIRYTHTTKV PRSSIYCQLN  180
VPFGFSILIY SCWNDLENID NLDDLQQLEH SLRLSLAQIS ARKASMPQLQ RRQLMSSECK  240
NELQTEIDID FGMEMEQQLE NFSWVRTDGN MNVPLKEEDP NLKLHQMYRD VTCSASSSLG  300
NYTGIFSKSS DYISAPKLEP SSIPGISADP NVEFSNLSFL NDQKLQQLAE WNLLGSPADY  360
YVSQILEASY KPQLGGNNNW ASSDTLPYVA VFDDPLYFRV NNGLVLQTVS EQIEFVAAAK  420
VREVVPGKKK KLKEELIRKR ALSCTEQSQY TNAEEAKIDK LQGHILYRIH MIPF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1427438KKKKLKEELIRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10020226m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0941120.0AB094112.1 Arabidopsis thaliana At1g69540 mRNA for MADS-box protein, partial cds.
GenBankAB1150130.0AB115013.1 Arabidopsis thaliana At1g69540 mRNA for MADS-box protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023644134.10.0agamous-like MADS-box protein AGL30 isoform X1
TrEMBLR0GC850.0R0GC85_9BRAS; Uncharacterized protein
STRINGXP_006300453.10.0(Capsella rubella)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69540.11e-179AGAMOUS-like 94