PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10020210m
Common NameCARUB_v10020210mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MIKC_MADS
Protein Properties Length: 483aa    MW: 54596.8 Da    PI: 9.1942
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10020210mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.52.3e-202970445
                     -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
           SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                     ++   rq t++kR++gi+KKA+ELS+LCd++v +++fs+tgk
  Carubv10020210m 29 QSMNARQSTYAKRKHGIMKKAKELSILCDIDVVLLMFSPTGK 70
                     566789**********************************98 PP
2K-box14.71.3e-062092464784
            K-box  47 slkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                      +l +LqqLe+ L  sl +i ++K  +   q ++l   e
  Carubv10020210m 209 NLDDLQQLEHSLRLSLAQISARKASMPQLQRRQLMSSE 246
                      789********************987665555554444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.8E-271877IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.4831870IPR002100Transcription factor, MADS-box
CDDcd002667.30E-2119101No hitNo description
SuperFamilySSF554556.67E-2319109IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-142040IPR002100Transcription factor, MADS-box
PfamPF003191.8E-173071IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-144055IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-145576IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
GFSIRVQGKF RFISQIRMGR VKLKIKKLQS MNARQSTYAK RKHGIMKKAK ELSILCDIDV  60
VLLMFSPTGK ASLCIGKHSI GEVIAKFAQV IPQERTKRKL DSLEALRKMF VKIDHVVDIS  120
GFLDRSTPAV EVCNTTSMML INNYDAEVSP NSRLLSGAKR KIQVSANTVI RYTHTTKVPR  180
SSIYCQLNVP FGFSILIYSC WNDLENIDNL DDLQQLEHSL RLSLAQISAR KASMPQLQRR  240
QLMSSECKNE LQTEIDIDFG MEMEQQLENF SWVRTDGNMN VPLKEEDPNL KLHQMYRDVT  300
CSASSSLGNY TGIFSKSSDY ISAPKLEPSS IPGISADPNV EFSNLSFLND QKLQQLAEWN  360
LLGSPADYYV SQILEASYKP QLGGNNNWAS SDTLPYVAVF DDPLYFRVNN GLVLQTVSEQ  420
IEFVAAAKVR EVVPGKKKKL KEELIRKRAL SCTEQSQYTN AEEAKIDKLQ GHILYRIHMI  480
PF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1435446KKKKLKEELIRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10020210m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0941120.0AB094112.1 Arabidopsis thaliana At1g69540 mRNA for MADS-box protein, partial cds.
GenBankAB1150130.0AB115013.1 Arabidopsis thaliana At1g69540 mRNA for MADS-box protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023644134.10.0agamous-like MADS-box protein AGL30 isoform X1
TrEMBLR0GCL80.0R0GCL8_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006300453.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149561620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69540.11e-179AGAMOUS-like 94