PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10020171m
Common NameCARUB_v10020171mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GRAS
Protein Properties Length: 506aa    MW: 55834.1 Da    PI: 5.3408
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10020171mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS435.44.3e-1331525031373
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      lv++Ll+cAeav++++l+la+al++++  las+++ +m+++a+yf+e+La+r++r        + p++++    s++l++   f+e +P+lkf+
  Carubv10020171m 152 LVHALLACAEAVQQNNLKLADALVKHVGLLASSQAGAMRKVATYFAEGLARRIYR--------IYPRDDD-VALSDTLQI--HFYESCPYLKFA 234
                      689****************************************************........4466554.334444444..5*********** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                      h+taNqaIlea++ +++vH+iD+++++GlQWpaL+qaLa Rp+gpp +R+Tg+g     s +el+e+g++L ++A+++gv+ ef+ ++ ++l+d
  Carubv10020171m 235 HFTANQAILEAFAMADKVHVIDLGLNHGLQWPALIQALALRPNGPPDFRLTGIGY----SLTELQEVGWKLGQLASTIGVNYEFKSIALNNLSD 324
                      *******************************************************....9********************************** PP

             GRAS 189 leleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                      l++e+L++++  E++aVn+v+ lhrll++++s+++    +L++++s++P+++++veqea+hn++ Fl+rf+e+l+yys+lfdsle +     ++
  Carubv10020171m 325 LKPEMLDIRSgSESVAVNSVFDLHRLLAHPGSIDK----FLSTIRSIRPDIMTIVEQEANHNGTVFLDRFTESLHYYSSLFDSLEGS----PSQ 410
                      **********99***************99999999....**********************************************99....455 PP

             GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                      ++++++ +lgr+i n+vaceg++r+erhetl++Wr+r+++ GFkpv+++++a+kqa++ll+ ++  dgy+v+e++g+l+lgW++rpL+++SaW
  Carubv10020171m 411 DRVMSELFLGRQILNLVACEGEDRVERHETLNQWRNRFGSGGFKPVNIGSNAYKQASMLLALHAgADGYSVDENEGCLLLGWQTRPLIATSAW 503
                      56666777************************************************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011294.4E-3932101No hitNo description
PfamPF120417.3E-323295IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098564.845126483IPR005202Transcription factor GRAS
PfamPF035141.5E-130152503IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0042538Biological Processhyperosmotic salinity response
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MKRELNHRES SAGEGGSSPM TTVIKEEAAG VDELLVVLGY KVRSSDMADV AHKLEQLEMV  60
LGDGISNLCD ETVHYNPSDL SGWVESMLSD LDPTRSQEKP GSEYDLRAIA GSAVYPREEH  120
VSRRSKRTRV EPEMSTTRSV VVLDSQETGV RLVHALLACA EAVQQNNLKL ADALVKHVGL  180
LASSQAGAMR KVATYFAEGL ARRIYRIYPR DDDVALSDTL QIHFYESCPY LKFAHFTANQ  240
AILEAFAMAD KVHVIDLGLN HGLQWPALIQ ALALRPNGPP DFRLTGIGYS LTELQEVGWK  300
LGQLASTIGV NYEFKSIALN NLSDLKPEML DIRSGSESVA VNSVFDLHRL LAHPGSIDKF  360
LSTIRSIRPD IMTIVEQEAN HNGTVFLDRF TESLHYYSSL FDSLEGSPSQ DRVMSELFLG  420
RQILNLVACE GEDRVERHET LNQWRNRFGS GGFKPVNIGS NAYKQASMLL ALHAGADGYS  480
VDENEGCLLL GWQTRPLIAT SAWSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-6914750414379Protein SCARECROW
5b3h_A5e-6914750413378Protein SCARECROW
5b3h_D5e-6914750413378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. No effect of the BOI proteins on its stability. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Has overlapping but distinct roles in GA signaling compared to RGA and GAI. Regulates the floral development. May also participate in seed germination and in ovule and anther development. Its activity is probably regulated by other phytohormones such as auxin and ethylene. {ECO:0000269|PubMed:11826301, ECO:0000269|PubMed:11877383, ECO:0000269|PubMed:12610625, ECO:0000269|PubMed:14615596, ECO:0000269|PubMed:14973286, ECO:0000269|PubMed:15128937, ECO:0000269|PubMed:16034591}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10020171m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not up-regulated upon GA treatment.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ1777530.0GQ177753.1 Arabidopsis thaliana ecotype Nok-3 RGL1 gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302161.10.0DELLA protein RGL1
SwissprotQ9C8Y30.0RGL1_ARATH; DELLA protein RGL1
TrEMBLR0HYV00.0R0HYV0_9BRAS; Uncharacterized protein
STRINGXP_006302161.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83728121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.10.0RGA-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yan A, et al.
    AtEXP2 is involved in seed germination and abiotic stress response in Arabidopsis.
    PLoS ONE, 2014. 9(1): p. e85208
    [PMID:24404203]
  3. Gallego-Giraldo C, et al.
    Role of the gibberellin receptors GID1 during fruit-set in Arabidopsis.
    Plant J., 2014. 79(6): p. 1020-1032
    [PMID:24961590]
  4. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  5. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  6. Li W,Wang H,Yu D
    Arabidopsis WRKY Transcription Factors WRKY12 and WRKY13 Oppositely Regulate Flowering under Short-Day Conditions.
    Mol Plant, 2016. 9(11): p. 1492-1503
    [PMID:27592586]
  7. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]
  8. Chen L,Xiang S,Chen Y,Li D,Yu D
    Arabidopsis WRKY45 Interacts with the DELLA Protein RGL1 to Positively Regulate Age-Triggered Leaf Senescence.
    Mol Plant, 2017. 10(9): p. 1174-1189
    [PMID:28735023]
  9. Zhang L,Chen L,Yu D
    Transcription Factor WRKY75 Interacts with DELLA Proteins to Affect Flowering.
    Plant Physiol., 2018. 176(1): p. 790-803
    [PMID:29133369]