PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

TALE

Protein Properties

Length: 525aa MW: 59821.2 Da PI: 6.8066

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10020140m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.8	1.1e-09	368	405	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+++e+ L+k++gL+++qV +WF N R + Carubv10020140m 368 FEHflHPYPKESEKIMLSKQTGLSKNQVANWFINARVR 405 665559******************************88 PP
2	BELL	125.4	2.2e-40	231	302	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqelq+kk+kLl++++eVdkrY+qy++q+++++ssFe+v+glg+akpYts+Al++iSrhFrcL+dai+eqi Carubv10020140m 231 ERQELQNKKSKLLTMVDEVDKRYNQYHHQMEALASSFEMVTGLGAAKPYTSVALNRISRHFRCLRDAIKEQI 302 79*********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.4E-51	164	300	IPR006563	POX domain
Pfam	PF07526	6.2E-48	170	298	IPR006563	POX domain
PROSITE profile	PS50071	12.066	346	409	IPR001356	Homeobox domain
CDD	cd00086	4.03E-11	349	410	No hit	No description
SMART	SM00389	1.9E-9	349	413	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.17E-17	350	416	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.7E-28	352	415	IPR009057	Homeodomain-like
Pfam	PF05920	1.8E-17	366	405	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 525 aa Download sequence Send to blast
MAVYYPNSVG MQSLYQESIY LNEQQQQQQA SSSSAASFSE IVSGGVRNNN EMVFIPPTSD 60 VAVNGNVTVS SNDLSFHGGG LSLSLGNQIQ SAVSVSPFQY HYQNLSNQLN YSNPNASTMS 120 DENGKSLSGH HHHQQQHHSD QMIPSSGYNN NGVGFFNNYR YETSGFVSSV LRSRYLKPTQ 180 QLLDEVVSVR KELKLGNKKM KNDKGQDFQN GSSDNITEDE KSQSQELSPS ERQELQNKKS 240 KLLTMVDEVD KRYNQYHHQM EALASSFEMV TGLGAAKPYT SVALNRISRH FRCLRDAIKE 300 QIQVIRGKLG ERETSEEQGE RIPRLRYLDQ RLRQQRALHQ QLGMVRPAWR PQRGLPENSV 360 SILRAWLFEH FLHPYPKESE KIMLSKQTGL SKNQVANWFI NARVRLWKPM IEEMYKEEFG 420 DSELLSNSNQ DNNKMLETSQ LKHEESSLQQ QNQGNNNNNM AYRSDAEENL VFADPKPDRV 480 ATGEYDSLMN YHGFGIDDYN RYVGLGNQQD GRFSNPHQLH DFVV*

Sequence ? help Back to Top

Protein Sequence Length: 525 aa Download sequence Send to blast

MAVYYPNSVG MQSLYQESIY LNEQQQQQQA SSSSAASFSE IVSGGVRNNN EMVFIPPTSD  60
VAVNGNVTVS SNDLSFHGGG LSLSLGNQIQ SAVSVSPFQY HYQNLSNQLN YSNPNASTMS  120
DENGKSLSGH HHHQQQHHSD QMIPSSGYNN NGVGFFNNYR YETSGFVSSV LRSRYLKPTQ  180
QLLDEVVSVR KELKLGNKKM KNDKGQDFQN GSSDNITEDE KSQSQELSPS ERQELQNKKS  240
KLLTMVDEVD KRYNQYHHQM EALASSFEMV TGLGAAKPYT SVALNRISRH FRCLRDAIKE  300
QIQVIRGKLG ERETSEEQGE RIPRLRYLDQ RLRQQRALHQ QLGMVRPAWR PQRGLPENSV  360
SILRAWLFEH FLHPYPKESE KIMLSKQTGL SKNQVANWFI NARVRLWKPM IEEMYKEEFG  420
DSELLSNSNQ DNNKMLETSQ LKHEESSLQQ QNQGNNNNNM AYRSDAEENL VFADPKPDRV  480
ATGEYDSLMN YHGFGIDDYN RYVGLGNQQD GRFSNPHQLH DFVV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	1e-15	355	413	5	63	Homeobox protein Meis2
3k2a_B	1e-15	355	413	5	63	Homeobox protein Meis2
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269\|PubMed:16513846}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10020140m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF353093	0.0	AF353093.1 Arabidopsis thaliana BEL1-like homeodomain 3 (BLH3) mRNA, complete cds.
GenBank	AY085278	0.0	AY085278.1 Arabidopsis thaliana clone 142443 mRNA, complete sequence.
GenBank	AY598452	0.0	AY598452.1 Arabidopsis thaliana BEL1-like homeodomain 3 protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006302135.1	0.0	BEL1-like homeodomain protein 3
Swissprot	Q9FWS9	0.0	BLH3_ARATH; BEL1-like homeodomain protein 3
TrEMBL	R0IEB0	0.0	R0IEB0_9BRAS; Uncharacterized protein
STRING	XP_006302135.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3820	19	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75410.2	0.0	BEL1-like homeodomain 3

Link Out ? help Back to Top
Phytozome	Carubv10020140m
Entrez Gene	17894213

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]