PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10020016m
Common NameCARUB_v10020016mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family Trihelix
Protein Properties Length: 598aa    MW: 66815.8 Da    PI: 6.1018
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10020016mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix91.39.9e-2967151187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW++qe+laL+++r++m+ ++r+++ k+plWeevs+km+e g+ r++k+Ckek+en+ k++k++keg+ +++  + +t+++fdqlea
  Carubv10020016m  67 RWPRQETLALLKIRSDMGIAFRDASVKGPLWEEVSRKMAELGYIRNAKKCKEKFENVYKYHKRTKEGRTGKS--DGKTYRFFDQLEA 151
                      8********************************************************************964..5557*******85 PP
2trihelix105.34.4e-33393478187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW+k e+ aLi++r++++++++++  k+plWee+s+ mr+ gf+r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  Carubv10020016m 393 RWPKVEIEALIKLRTNLDSKYQENGPKGPLWEEISAGMRRLGFNRNSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 478
                      8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.1264126IPR001005SANT/Myb domain
PfamPF138375.7E-1866152No hitNo description
PROSITE profilePS500906.95766124IPR017877Myb-like domain
CDDcd122031.91E-2266131No hitNo description
PROSITE profilePS500907.271386450IPR017877Myb-like domain
SMARTSM007170.0017390452IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-4391449IPR009057Homeodomain-like
PfamPF138373.3E-22392479No hitNo description
CDDcd122033.89E-27393457No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MMQLGGGTPT TATTTAASTA TTTAPPPPPP PPAQSNDSAA TEAAAAAAVG AFEVSEEMNE  60
RGFGGNRWPR QETLALLKIR SDMGIAFRDA SVKGPLWEEV SRKMAELGYI RNAKKCKEKF  120
ENVYKYHKRT KEGRTGKSDG KTYRFFDQLE ALETQSTTSH HHHHNNNNNS SIFSTPPPVT  180
TVLPSVATLP SSSIPPYTLP SFPNISADFL SDNSTSSSSS YSTSSDMDMG GATTNRKKRK  240
RKWKDFFERL MKQVVDKQED LQRKFLEAVE KREHERLVRE ESWRVQEIAR INREHEILAQ  300
ERSMSAAKDA AVMAFLQKLS EKQPNHPTVP QPQQVRPQMQ LNNNNNQQQT QPPPPLPQPI  360
QALVPTTSDT VKTDNGDQHM TPASASGSAS SSRWPKVEIE ALIKLRTNLD SKYQENGPKG  420
PLWEEISAGM RRLGFNRNSK RCKEKWENIN KYFKKVKESN KKRPEDSKTC PYFHQLDALY  480
RERNKFHSSS NNNNIASSSS ASGLVKPDNS VPLMVQPEQQ WPPAPVTATV TAAVAAAQQP  540
DQHPQPSDQN FDDEEGTEEE YEEDEDEDED EENEEEEGGE FELVPSSNNT NKTTNNL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235240RKKRKR
2235241RKKRKRK
3236241KKRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10020016m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302034.10.0trihelix transcription factor GT-2
SwissprotQ391171e-146TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLR0GGE90.0R0GGE9_9BRAS; Uncharacterized protein
STRINGXP_006302034.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48492553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.10.0Trihelix family protein