PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10019876m
Common NameCARUB_v10019876mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 709aa    MW: 78491.2 Da    PI: 4.8748
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10019876mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding292.5e-09597645348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v ++G g W+ I ++       Rt  ++k++w+++l
  Carubv10019876m 597 AWTLSEVTKLVEGVSKYGAGKWSEIKKHSFssySYRTSVDLKDKWRNLL 645
                      7****************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.069590649IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-14592651IPR009057Homeodomain-like
SMARTSM007173.3E-10594647IPR001005SANT/Myb domain
CDDcd116604.36E-21596646No hitNo description
SuperFamilySSF466892.32E-16596655IPR009057Homeodomain-like
PfamPF002493.2E-7597645IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MGTVVGTVED CREMFEGSAQ TRITPFSSSN QIGNPVAYKL VRVSGDGRLV PATDEEILEV  60
NDADMHIVSD ACQTVDYLAT DEENLEVSQK NMHIASDACQ TVGYLATDEE NLEANETNMH  120
IASDACQTVG YLATDEENLE ANETNMHIAS DSCETVCYLS AEGMPSGLSQ FENSEAMNSG  180
LLQSDNVPPY IDQYNGEMLQ KVEQDERLGN VHGSQMPSTP SDANIQCSNE DTFNKEDQVH  240
HVALLQEPIS LSSNVENECN MNQPDMIEPC SNAAASPKET ALSVTAQKPD FSRVRGDICL  300
DNLPIKALQE TFRATFGRET TVKDKTWLKR RIAMGLINSC DVPATNLTIK DNKLVGNQEK  360
SNVMTNVISK DMGDDVRAAK PKDAPSSIDH VNASDHYYAS EDYSSEQRAA KRVRKPTRRY  420
IEELSETDEK QQNDKSMIPS KDQRLSEKPE VRSISVSSGK RVAVTRMVSL AGSEIEVPYV  480
SHVRRSRPRE NIMALMDCHS SCLENRASPA ESNFSLTPSQ LNNEVVKQDL VVKSASRPVQ  540
KEVATSHKNN EEPILSEVDQ DTEPEHIDSS GNSSDDNNNM DVTIMQGGAL RRKHHRAWTL  600
SEVTKLVEGV SKYGAGKWSE IKKHSFSSYS YRTSVDLKDK WRNLLKASFA QSPSNSMGSL  660
KKHGSMHIPM QILSRVRELV EKQSLVPPVS KVGGDSNRRE RETRSDIL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10019876m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0456280.0AY045628.1 Arabidopsis thaliana At1g72650/F28P22_16 mRNA, complete cds.
GenBankAY0845300.0AY084530.1 Arabidopsis thaliana clone 110945 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006300624.10.0uncharacterized protein LOC17894921 isoform X2
TrEMBLR0GCR00.0R0GCR0_9BRAS; Uncharacterized protein
STRINGXP_006300624.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43642649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.10.0TRF-like 6