PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10019784m
Common NameCARUB_v10019784mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 859aa    MW: 88953.3 Da    PI: 10.5761
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10019784mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.61e-11195239144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 
                      r++W++eEde l+ avk++G g+W++Ia++     Rt+ q+  rw
  Carubv10019784m 195 RKKWSAEEDEELIAAVKRHGEGSWALIAKEEFeGERTPSQLSQRW 239
                      789*************************99777789999999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-15190243IPR009057Homeodomain-like
PROSITE profilePS5129417.387190247IPR017930Myb domain
SuperFamilySSF466892.23E-12191245IPR009057Homeodomain-like
SMARTSM007174.2E-11194245IPR001005SANT/Myb domain
PfamPF002491.1E-9195239IPR001005SANT/Myb domain
CDDcd116602.03E-13196239No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 859 aa     Download sequence    Send to blast
MVDNSNNKKR KEFISEADIA TLLERYDTMT ILRLLQEMAY YADTKMDWNE LVKKTSTGIT  60
NAREYQLLWR HLAYRDSLLP VEDNAQLMND DSDMECELEA SPAVSVDIVT EAVAHVKVMA  120
SSYVPSESDI PEDSTVEAPM TINIPYCLPR GAQEPSDSFW SSRGMNITFP VSLPKAAEGH  180
NGNGLASSMA PRKRRKKWSA EEDEELIAAV KRHGEGSWAL IAKEEFEGER TPSQLSQRWG  240
AIRRRCDTSN TSTQTGIQRT EAQMAANRAL SLAVGNRLPS KKLAVGTPPM LSSGTITGAQ  300
ANGANSGSTL QGQQQSQPQP QALPRPAVSA SSIKSRVPGK KTTTNSSSRV ELMVTANSAA  360
AAACMSGLAT AVSVPKTEPG KNNVSALVPK VEPVKTTSTA SLPRPSGISS VLNAEPIKTV  420
SAASVPRPLG IVSAPKVEPV KTAAAAASLP RPSGIISAPK AEPAKTATSA ASFPRPSGII  480
SAPKAEPVKS AASAASLPRP SGMISAPKAE PLKPASAASV PRPLGITSAP KAEPVKTAAA  540
AASLPRPSGI VSAPKAEPVK TAISAASFPR PSGIISAPKT DPVKSAASAV SLPRPSSMIS  600
APKAEPLKPA SAAALPRPSG IVISPPRAAP VKTAPAASLP RPSNILSAPK AEPVKSVSAT  660
ASNTKAVGPV NLRHAVNGSS NHVISSSPSS KPSLMAPLPK GSTIQNNSVP PSFASSRLAP  720
TQRVPAATVM PQKPSVGAAV AAVSKLVGVQ KQQTQGDRAS SLATTALPLN KTLPTNSVIS  780
TSNVVATQVE TPSLMPKKNQ VVGSSTDKIL LAKPPEKESS TTTTPLVVAA AESKSKDEAS  840
HRESQDVAAV TGTRQKEL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10019784m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006300610.10.0nascent polypeptide-associated complex subunit alpha, muscle-specific form
TrEMBLR0IAE00.0R0IAE0_9BRAS; Uncharacterized protein
STRINGXP_006300610.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48232751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58220.10.0MYB_related family protein