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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10019521m | ||||||||
Common Name | CARUB_v10019521mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 254aa MW: 28676.8 Da PI: 4.6835 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 34 | 3.8e-11 | 23 | 62 | 4 | 43 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 + k +r+v skRr++++ KA L+ L +a+vav + s+ Carubv10019521m 23 DTKQQRSVACSKRRQTLFSKAANLCLLSGANVAVFVTSPA 62 56889********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 12.587 | 12 | 60 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.9E-17 | 12 | 71 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 2.78E-22 | 13 | 97 | No hit | No description |
SuperFamily | SSF55455 | 1.83E-14 | 14 | 96 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.6E-10 | 25 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MSSNVSDQMR RGTKRKIEIK KRDTKQQRSV ACSKRRQTLF SKAANLCLLS GANVAVFVTS 60 PAENSDVVYS FSGYSPASVI ADCYFSGKSP PKVTSNPQSK LGFWWEAPDL YRYCDDLSEL 120 NVIEDRMMRT KKYLMAFLEK QEKSQSLSDS DQNPSSSSLD QNPNFSSPSC SLEKICDESS 180 SQATCYTDDQ NPRFCESSSL DQSRYLVVKD DLDFVDSLWE TEKSITNEDQ SFWDNVFCLN 240 NDNNNLQVPL PDH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 9 | 15 | RRGTKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10019521m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023638880.1 | 0.0 | LOW QUALITY PROTEIN: agamous-like MADS-box protein AGL97 | ||||
TrEMBL | R0H9P9 | 0.0 | R0H9P9_9BRAS; Uncharacterized protein | ||||
STRING | XP_006293201.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6395 | 14 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G48150.1 | 3e-83 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10019521m |
Entrez Gene | 17887044 |