PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10019491m
Common NameCARUB_v10019491mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HSF
Protein Properties Length: 282aa    MW: 32740.8 Da    PI: 5.2816
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10019491mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.92.1e-35281202103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl k+ye+++d+++++++sws++g sfvv+d+ +f+ ++Lp yFkh+nf+SFvRQLn+YgF+k+++e+         weF ++ F  g+++ll+
  Carubv10019491m  28 FLAKTYEMVDDPNTNNIVSWSREGISFVVWDPYSFSASILPLYFKHNNFSSFVRQLNTYGFRKIETER---------WEFMNEGFLMGQRDLLK 112
                      9****************************************************************999.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                      +ikr++s+
  Carubv10019491m 113 SIKRRTSS 120
                      *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.5E-5424117IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.9E-3624117IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.35E-3324117IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.1E-202851IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.6E-3128117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-206678IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406791IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-207991IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009644Biological Processresponse to high light intensity
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MDPSSRSRAR SMPHVPVEGL QEPGPSPFLA KTYEMVDDPN TNNIVSWSRE GISFVVWDPY  60
SFSASILPLY FKHNNFSSFV RQLNTYGFRK IETERWEFMN EGFLMGQRDL LKSIKRRTSS  120
SFPSSLIHSH PESHDPSVEL PQLREERHVL VMELSRLRQE EQRARGYIQA MEQRINGVEK  180
KQRHMMSFLR RAVQNPSLLQ QVLEQMRGLE EAAMIDQASL VKTEAVEHVS ELEALALEMQ  240
GYGRKRIDGV ERELDDGFWE ELLMNNENWN NEEEANVNQV N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-242412013123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110116LKSIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10019491m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006293175.10.0heat stress transcription factor A-7b isoform X1
SwissprotQ9M1V51e-166HFA7B_ARATH; Heat stress transcription factor A-7b
TrEMBLR0HQ530.0R0HQ53_9BRAS; Uncharacterized protein
STRINGXP_006293175.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148361619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G63350.11e-154HSF family protein