PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10019452m
Common NameCARUB_v10019452mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 521aa    MW: 59959.9 Da    PI: 5.2314
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10019452mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM91.51.4e-28221521128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk...leleev.ikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                      lppGf++ Pt++e++   L++k +  +   ++  +  i++v+iy+++P++L  + +k+++++w+f sk +   ++++r++r  ++gyW++t  +
  Carubv10019452m  22 LPPGFHYTPTNKEVI-LLLERKQDYLDgnrNSSINLpIHRVNIYDSNPQQLSaEYTKGNSTDWFFISKMNMMGKSETRHKREGNDGYWHQTVAS 114
                      79*************.778888554443334444556**************945666677799999999999999******************* PP

              NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++ + ++ l+g k++L+++ gr+p+g kt+W+mhey +
  Carubv10019452m 115 IKIDA-GEGLIGKKTSLTYFLGRRPHGIKTNWLMHEYWI 152
                      ***99.999****************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-3318173IPR003441NAC domain
PROSITE profilePS5100533.04622173IPR003441NAC domain
PfamPF023651.8E-1223150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MPSSSSADDH SPSSPPSTGL SLPPGFHYTP TNKEVILLLE RKQDYLDGNR NSSINLPIHR  60
VNIYDSNPQQ LSAEYTKGNS TDWFFISKMN MMGKSETRHK REGNDGYWHQ TVASIKIDAG  120
EGLIGKKTSL TYFLGRRPHG IKTNWLMHEY WISQSPTGGG DVKDYAMCKI YVSPQAPKQD  180
KSEEEANERK KKKTEETENE RKKKKALRNK VEQQQQPEYH QQQQFWPIPR DYYQNIAYQE  240
QLLFQPAPLD SCQPKPRDLA HQQHQFWSAQ PHNVASQQLQ FQPPPRDSSQ PQLRDLAHQQ  300
HQFWSAQPHD VQQLQFQPPP RDSSQPQLRD LAYQQQQFWS AYQQLQFQPP PRDSSQPQPR  360
DLAYQQQQYW PGPRDSYQQQ HCGMVTTTPL EEEDVTQSQQ QQPSVAPPPQ GQDSRSGMEM  420
TQEDEYKVEM FRDLIRELCN NNEEEDGVVT QQQQQSTPVL PPPPPPPQGQ DPTSGNVMTD  480
QDGSHGLFND DLWNPDNFFD IDELLGDFEK GHDVCGPEKS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-181617114166NAC domain-containing protein 19
3swm_B2e-181617114166NAC domain-containing protein 19
3swm_C2e-181617114166NAC domain-containing protein 19
3swm_D2e-181617114166NAC domain-containing protein 19
3swp_A2e-181617114166NAC domain-containing protein 19
3swp_B2e-181617114166NAC domain-containing protein 19
3swp_C2e-181617114166NAC domain-containing protein 19
3swp_D2e-181617114166NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190204KKKTEETENERKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10019452m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010431411.12e-81PREDICTED: NAC transcription factor 29-like
TrEMBLR0H2590.0R0H259_9BRAS; Uncharacterized protein
STRINGXP_006290451.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27931563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55210.19e-47NAC domain containing protein 63