PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

Protein Properties

Length: 282aa MW: 31702.2 Da PI: 4.4667

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10019277m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	64.2	2e-20	13	101	1	97
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ffkv++++++ s + +p +f+e+ + + t +l+ + gr W+v++ +k ++++++t+GW++F+++++L +g+f++F +dg+++f v Carubv10019277m 13 FFKVFLSESA--SESFAIPLSFMEHLADP--LPNTAKLQGTGGRDWTVNM--TKIRDGVYFTAGWSKFAQDHELVDGEFLTFVYDGHRTF--EV 98 8999955555..5558*****666655..889************..******************************998888..77 PP EEE CS B3 95 kvf 97 +vf Carubv10019277m 99 SVF 101 776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	13.408	11	104	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	8.24E-23	11	105	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	6.6E-23	11	103	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.95E-19	11	101	No hit	No description
SMART	SM01019	1.2E-20	13	104	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.6E-17	13	101	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	2.35E-7	183	277	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.7E-5	183	278	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	0.11	187	276	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MAEHDDDVLL PRFFKVFLSE SASESFAIPL SFMEHLADPL PNTAKLQGTG GRDWTVNMTK 60 IRDGVYFTAG WSKFAQDHEL VDGEFLTFVY DGHRTFEVSV FGRLGCKETR AEVEAIAVDG 120 SSSDSDGSSS DSEEERELSM DFYGDTSLGE DEEISQSLYP LEDEETESDS AVVEGNLDIE 180 ALTNPHFSTT LKNRIYELLI PANVVKENKL TFGDSVKYID GEGTLVGLRG KWADDRICFK 240 GWDRICRRNR LKKHQDTVEC ELLHDRNKVH SIRVHIMRGT T*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1yel_A	5e-22	12	106	10	104	At1g16640
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10019277m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006293000.1	0.0	B3 domain-containing protein REM20
Swissprot	Q8LAV5	1e-130	REM20_ARATH; B3 domain-containing protein REM20
TrEMBL	R0HPM7	0.0	R0HPM7_9BRAS; Uncharacterized protein
STRING	XP_006293000.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1561	23	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53310.1	1e-129	B3 family protein

Link Out ? help Back to Top
Phytozome	Carubv10019277m
Entrez Gene	17886671

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]