PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10019187m
Common NameCARUB_v10019187mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 335aa    MW: 37825.1 Da    PI: 5.008
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10019187mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1553.2e-48131391128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                      + pGf+F+Ptd el+++yLk+k++g + ++ e+i+ev+iy++ePwdLp k++ ++++ew+fF+ r kky++g++++ratk gyWkatgk+++v+
  Carubv10019187m  13 MFPGFKFSPTDIELITYYLKRKIDGLERSV-EIIPEVEIYNFEPWDLPdKSIVKSDSEWFFFCARGKKYPHGSQNRRATKMGYWKATGKERNVK 105
                      579************************999.89***************778888899************************************* PP

              NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      s ++e++g+k+tLvf+ grapkg +t+W+mhey +
  Carubv10019187m 106 S-GSEVIGTKRTLVFHIGRAPKGGRTEWLMHEYCM 139
                      *.9******************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-529154IPR003441NAC domain
PROSITE profilePS5100550.99613155IPR003441NAC domain
PfamPF023651.6E-2415138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MAAAAVEPAV TTMFPGFKFS PTDIELITYY LKRKIDGLER SVEIIPEVEI YNFEPWDLPD  60
KSIVKSDSEW FFFCARGKKY PHGSQNRRAT KMGYWKATGK ERNVKSGSEV IGTKRTLVFH  120
IGRAPKGGRT EWLMHEYCMI GVSLDALVIC RLRRNTEFQG ATIQKSPQPN TLPEKHVNTQ  180
NDAISESISD WENMVDFYLS SESGQELLSE IAESSQSSQN PQVPSEEDFY ADILRDEIVK  240
LDDPAVSGNT LINVPRLQAE SNTTRVLPLP NMVDIQMQSL LQKLPLQNDT GEENNISMSN  300
CFIGIYSIKS INRARWDVVA WVLVMIAVLV FYLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-411515522168NAC domain-containing protein 19
3swm_B2e-411515522168NAC domain-containing protein 19
3swm_C2e-411515522168NAC domain-containing protein 19
3swm_D2e-411515522168NAC domain-containing protein 19
3swp_A2e-411515522168NAC domain-containing protein 19
3swp_B2e-411515522168NAC domain-containing protein 19
3swp_C2e-411515522168NAC domain-containing protein 19
3swp_D2e-411515522168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcription factor involved in modulation of abscisic acid (ABA) signaling. Attenuates ABA sensitivity and glucose-induced ABA accumulation. Reduces the expression of ABI4 gene. {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:24625790}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10019187m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By glucose (PubMed:24625790). Induced by salt, drought stress and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:24625790}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006292920.10.0NAC domain-containing protein 60 isoform X2
SwissprotQ9LXL90.0NAC60_ARATH; NAC domain-containing protein 60
TrEMBLR0HPC60.0R0HPC6_9BRAS; Uncharacterized protein
STRINGXP_006292920.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43092356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44290.10.0NAC domain containing protein 60
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]