PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10019084m | ||||||||
Common Name | CARUB_v10019084mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | NAC | ||||||||
Protein Properties | Length: 157aa MW: 18060.8 Da PI: 7.9606 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 41 | 6.1e-13 | 12 | 136 | 10 | 128 |
NAM 10 tdeelvveyLkkkvegkkleleev.ikev..diykvePwdLpk..kvka..eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 tde+++ yL++kv+g+ + ++ ++++ ++y+ ePw Lp+ + +ew+ kr++ky+ +++ + +g W +++ls+ Carubv10019084m 12 TDEDIIEGYLRPKVNGEATANPRFiVDNMgeELYTREPWLLPQptD--PilNPREWFCLGKRNSKYR---QAEGVDCEGAWILIQGRTPILSEe 100 9****************966655535555558*********96332..233778*****99999996...34556679****988889999875 PP NAM 96 kgelvglkktLvfy...kgrapkgektdWvmheyrl 128 +ge++g + + k+++ ++W+m +y l Carubv10019084m 101 SGEVIGATMRFRYCfrkKNDKAAMAFSNWFMRQYCL 136 677777777777666544455556689*******87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 21.487 | 3 | 155 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-7 | 8 | 135 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.22E-21 | 11 | 153 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MVGQGEVRCR ITDEDIIEGY LRPKVNGEAT ANPRFIVDNM GEELYTREPW LLPQPTDPIL 60 NPREWFCLGK RNSKYRQAEG VDCEGAWILI QGRTPILSEE SGEVIGATMR FRYCFRKKND 120 KAAMAFSNWF MRQYCLCDKS KPYNTPHVLC KITCNI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10019084m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006290412.1 | 1e-115 | NAC domain-containing protein 96 | ||||
TrEMBL | R0HE41 | 1e-114 | R0HE41_9BRAS; Uncharacterized protein | ||||
STRING | XP_006290412.1 | 1e-114 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15427 | 11 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64105.1 | 3e-59 | NAC domain containing protein 27 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10019084m |
Entrez Gene | 17885751 |