PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10018723m
Common NameCARUB_v10018723mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 157aa    MW: 18448.2 Da    PI: 8.1177
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10018723mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM45.13.3e-141213610128
              NAM  10 tdeelvveyLkkkvegkkleleev.ikev..diykvePwdLpk..kvka..eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                      +de+++  yL++kv+g+ +   ++ ++++  ++y+ ePw Lp+        + +ew++  kr+ ky +   ++ +  +g W      +++lsk 
  Carubv10018723m  12 SDEDIIEGYLRRKVNGEATANPRFiVDNMeeELYTREPWLLPQptD--PilNPREWFYLGKRNWKYLH---AEGVHCEGAWILIQGRTPILSKe 100
                      7****************955544424433348*********96332..233778**********9975...5556678****998889999985 PP

              NAM  96 kgelvglkktLvfy...kgrapkgektdWvmheyrl 128
                      +ge++g    + +    k+++    +t+W+m eyrl
  Carubv10018723m 101 SGEVIGATMRFRYCfrnKNDTTAMAHTSWFMREYRL 136
                      67778877777776655556666779********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.5493155IPR003441NAC domain
PfamPF023659.1E-98136IPR003441NAC domain
SuperFamilySSF1019411.83E-2212153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MVSEGEVRCR ISDEDIIEGY LRRKVNGEAT ANPRFIVDNM EEELYTREPW LLPQPTDPIL  60
NPREWFYLGK RNWKYLHAEG VHCEGAWILI QGRTPILSKE SGEVIGATMR FRYCFRNKND  120
TTAMAHTSWF MREYRLCDKT KPYNTRHVLC KITCNL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10018723m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006292493.11e-115NAC domain-containing protein 96
TrEMBLR0FSJ71e-114R0FSJ7_9BRAS; Uncharacterized protein
STRINGXP_006292493.11e-115(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM154271117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64105.12e-61NAC domain containing protein 27