PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10018433m
Common NameCARUB_v10018433mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family TCP
Protein Properties Length: 152aa    MW: 16953 Da    PI: 10.2167
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10018433mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP99.17.8e-31121453103
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..ssssaseceaesssssasnsssg...... 88 
                      +++++h+++h  vggRdRR+Rl+a++a ++F+L++eLGf +d++t++WLlq+a+pai ++tg   ++++++  +++++         +      
  Carubv10018433m  12 KATRSHKDRHVRVGGRDRRIRLPANVAPQLFKLTKELGFHTDGETVNWLLQNAEPAIFAATGHgiNTTPNNVINSNNNI--------Hryslis 97 
                      5789***********************************************************7744444333111111........1112223 PP

              TCP  89 .................................kaaksaakskksqks 103
                                                       ka+++ ++++++q++
  Carubv10018433m  98 gnnctinniftctgvntghpemvfpgtsstfpvKAEEDVPNQNQQQQQ 145
                      333445566666666666666777776666665333333333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.7E-2616132IPR005333Transcription factor, TCP
PROSITE profilePS5136921.861771IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MVSRKEMKNQ QKATRSHKDR HVRVGGRDRR IRLPANVAPQ LFKLTKELGF HTDGETVNWL  60
LQNAEPAIFA ATGHGINTTP NNVINSNNNI HRYSLISGNN CTINNIFTCT GVNTGHPEMV  120
FPGTSSTFPV KAEEDVPNQN QQQQQQPQGP QL
Functional Description ? help Back to Top
Source Description
UniProtRequired during early processes in pollen development. {ECO:0000269|PubMed:16786299}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00390DAPTransfer from AT3G45150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10018433m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006292227.21e-110transcription factor TCP16
SwissprotQ9M1U42e-50TCP16_ARATH; Transcription factor TCP16
TrEMBLR0HIU41e-109R0HIU4_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006292227.11e-110(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157501016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45150.12e-27TCP domain protein 16
Publications ? help Back to Top
  1. Uberti-Manassero NG,Coscueta ER,Gonzalez DH
    Expression of a repressor form of the Arabidopsis thaliana transcription factor TCP16 induces the formation of ectopic meristems.
    Plant Physiol. Biochem., 2016. 108: p. 57-62
    [PMID:27404135]